Coregonus clupeaformis (lake whitefish): 121535257
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Entry
121535257 CDS
T08357
Symbol
trpa1a
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1a
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121535257 (trpa1a)
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121535257 (trpa1a)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
121535257
NCBI-ProteinID:
XP_041698071
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Position
21:complement(17370659..17390329)
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AA seq
1117 aa
AA seq
DB search
MSSSKTDLMQDKTYQSMIHGDDATEISGKIFEWALQGDSAVLGKHSALLGVRDQANASPL
HYATSHGHISTIQLIVQLTGPDELNASDEEGNTPLHWAVQRTQRESCACLLDLGADPNIL
NLRLMSPLHLAVSLGHNALVELLLSHSNTDANLEGDQGNTPVMLACSVDNHEALRLLFKY
RARLCQQNKLGHYPIHAAAFAGAKKSMLVVLQKCEEMGCSTETHINYVDKSFSTPLHLAV
HGGNLEVIKLCIEHGAKIDQQQCDNSTALHFACTQGATEAVKLMLSAYDRVCDVINITDG
ASQTPLHKATIFDHVELAEYLISKGADINSIDCKGHTPLLLATSCSAWKTVGLLLTHGAN
LKIKDQYDCNFLHLAILQPKGLKNLPPEVLQCSNVRELLGAEDNEGCTPLHYACRLGIPE
SVTNMLGLNVSLDQKSKQKKSALHFAAEYGRINTCHRLLESMTSTRLLNEGDERGMTPLH
LASRGGHIKVVELLLRKGALFHSDYKGWTCLHHAAAEGYTQTMIILLASNIKLLDKTDDE
RNTALHLAAREGHAAAVTLLLGRGAQMMLNKSDASFLHEAVLNGRKDVAIAVIHNERCAE
AMLLFEVKSTKRCVVMDMIEFLPESFKHLLDACVNESDDDVNSYNYSIEYTFKWLQAPMH
IIKLAKTDKSYYFQPLTALNSMVQFNRIELLTHPVCKKYLEMKWNAYGIKVHLLNLAIYS
LGLGPLTHVIHTLKPILNTNVTNTTSPSVSMVTTSLDKQCYFITTCMFLILAMNMYTVGK
ELVQIVHQGSKYFRDVTNALDWGASVTSLLFVIPLLMDFKDTWHWEAGVVAVLLSWINFL
LYFQRFECVGIYVVMFLEIAKTLLSIIVLFFFLLLAFALAFYALMLEQNFFDSRSSLLLA
IMQAFVMMVGEFNYQENILKPFLEGILPFPSLTYAIFVMFTFAVPILLMNLMIGLAVGDI
AKVQENAVLKQMGMQIELHTSLEEKMPYWLMKRVDQDSLTEYPNRACSRKREMFFAMLGM
GHERTRLNSTSHRFTPMEQEISKQKYRLKEMSNVIEKQHNLLKLIVQKMEISSEAEEEHD
GPQLFQGYRDKPLPPKSKWNPLLRALAAREYHPSHIL
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagctcctcaaagaccgacctgatgcaggacaagacctaccagtctatgattcatgga
gatgatgctacagagatttctggcaaaatatttgagtgggctctgcaaggtgactcggca
gtgttgggaaagcactcagccctgctgggggtccgtgaccaagccaatgccagccctctg
cattacgcaacctcacacgggcatatcagcaccatacagctcattgtgcagttgactggt
ccagatgaactgaatgccagtgatgaggagggtaacactccattgcactgggctgtgcag
aggacccagagagagagctgtgcttgcctgctggacctgggggcagacccgaacatcctc
aacctccgcctcatgtctcccctgcacctggctgtcagcctcgggcacaacgctctcgtc
gagctgttactgtctcacagcaacacggatgccaacctggagggagaccaggggaacaca
cctgtaatgttggcctgctcggttgataaccatgaagctcttcgtctactttttaaatac
agagccagactatgtcaacagaacaagctggggcattatcccattcacgcagcagcattt
gcaggtgctaaaaaatcaatgctggtggttcttcagaaatgtgaggagatgggttgctca
actgaaacgcacatcaactacgtggacaaatcattcagcactcctcttcatctggccgtc
catggaggcaacctggaggtgatcaaactctgcatagaacatggagcaaaaatcgaccaa
caacagtgtgacaactccacagccctccactttgcctgtacccagggagcaaccgaggcg
gtcaaactcatgctatcagcatatgatagagtctgtgatgtcatcaatatcacagatgga
gctagccaaaccccactgcataaggcaacaatatttgaccatgttgaattggctgaatac
ctcatttcaaagggcgcagacattaactccattgactgtaagggtcataccccactgctt
ctggcaacaagctgtagtgcatggaaaacagtggggcttcttcttacacatggcgctaat
ttgaaaataaaagaccaatatgactgcaatttccttcaccttgccatcttgcagcctaaa
ggtctgaaaaaccttcctccagaagtcttacagtgcagcaatgtgagagagctcctgggt
gcagaggacaatgagggttgtactcccctgcactacgcctgcagactgggaatcccagag
tcagtgacgaacatgctcggactcaatgtctcactggaccagaagtctaagcagaagaaa
tctgcactgcatttcgcagccgagtatgggaggataaacacctgccacagactcctggag
agcatgaccagcaccaggctgctgaacgagggagatgagagggggatgactcccctccac
ctggcatcccgcggcggccatattaaagtggtagagctgctgctgcgaaaaggagctctg
ttccacagtgattataaaggttggacctgtctacatcacgctgcagcagaaggctacacc
cagaccatgatcatactcctggcatcaaatatcaaactgctggacaaaacagatgacgaa
aggaacacagcgttacatctggctgccagggagggtcatgcggctgcagtgacactgctc
ctgggcagaggggcccagatgatgctcaacaagagtgatgcctccttcctccatgaagct
gttctcaacggcaggaaagacgttgccatcgctgtcatccacaatgagagatgtgctgag
gctatgctattgttcgaagtgaagtcaactaagcgatgtgttgtcatggacatgatagag
ttcctgccagagtcattcaaacatcttttggacgcttgtgtgaatgagtcagatgatgac
gtaaatagttacaactactctatcgagtacactttcaaatggctacaagctcccatgcat
atcattaagcttgcaaaaacggacaaaagctactactttcagcctctcactgctctgaac
tccatggtgcaatttaatcgcatagagcttctgacccatcctgtctgcaagaagtatcta
gaaatgaaatggaacgcctatggtatcaaagtgcatctgctcaatctggccatctactca
cttggtctggggcctctgacacacgtcattcatactctgaagcccatcctcaacaccaat
gtcaccaatactacatcaccatcagtaagcatggtgaccacctcccttgacaagcaatgc
tattttatcaccacctgcatgttcctgattcttgccatgaatatgtacacagttggcaag
gagctggtgcagatagttcatcagggttcaaagtacttccgtgatgtgaccaatgcattg
gactggggtgcttccgtcacttctctgttgtttgtgatcccgttactgatggacttcaag
gacacatggcattgggaggctggggtagtggcagttcttctatcctggatcaactttctt
ctctatttccaacggtttgaatgtgttgggatctacgtggtgatgtttttagagattgca
aaaactcttttaagcatcattgtactgttcttcttcttgctgctggcgtttgctttggcg
ttctatgccctgatgctagaacagaacttttttgacagtagatctagtttactgctagca
attatgcaagcatttgtcatgatggttggagaattcaactaccaagaaaatatcctgaag
ccatttctggaagggattctgccattcccttctttgacctacgccatttttgttatgttc
accttcgctgtgcccattctcctcatgaacctaatgattggcttggctgttggtgacata
gcaaaggtacaggagaatgctgtgctgaagcaaatgggaatgcagattgagcttcacact
agtctagaggagaagatgccgtactggttaatgaagagggttgaccaggactctctcact
gagtaccctaacagagcctgcagcagaaagagagaaatgttctttgcaatgctgggtatg
gggcatgagagaacccgtctcaactccacttcccatcggtttacacctatggaacaggaa
atcagtaaacagaagtacaggctgaaggagatgtctaatgttattgagaagcagcacaac
ctgctgaagctgatcgttcagaagatggagatcagttcggaggcggaggaagagcatgac
ggtcctcagctgttccaaggctacagggataagcccctcccccccaagagcaaatggaac
cctctgctgagggcactggcagccagggagtatcatccatcacatatattataa
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