Coregonus clupeaformis (lake whitefish): 121535301
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Entry
121535301 CDS
T08357
Name
(RefSeq) protein SSXT isoform X1
KO
K15623
protein SSXT
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121535301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121535301
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121535301
GBAF(ncBAF) complex
121535301
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
121535301
NCBI-ProteinID:
XP_041698158
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Position
21:complement(33310373..33326894)
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AA seq
442 aa
AA seq
DB search
MSVAFAPHRQRGKGDITPAGIQKLLDENNQLIQCIMDFQSKGKTAECSQYQQMLHRNLVY
LATIADSNQNMQSLLPAKCDSPTPPEVKLEPPTQNMPMGPGGMNQSGAPGPQPPHGHNMP
SEGMVSGGPPAPHMQSQMNGQMPGPNHMPMQGPGPGPNQPPNIPGSGSINMPPSSHGSMG
GYNHAVPPSQGMPAQGQMNMTQGPMGNYGPRPNMNMQPNQGPMMHQPPSQQYNMPPGGGG
QHYQGQQNPMGMMGQGNHVMGQRSMPPYRPPQQGPPQQYPGQEDYYGDQYSHAGQGASEE
RDPAANQQSPYEKDNERDPAANQQSPYEKDHERDPAANQQSPYEKDHGNAQYGQQQEAYQ
QGPPQQQGYPPQQQYPGQQGYPGPQQGYGPSQGAPGQYPQGYPQGQGQQYGAYRGPQPGP
PQAQQQRPYPGYDQGQYGNYQQ
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcgtttgcacctcatagacaacgtggaaagggtgatattacacccgctgga
attcaaaagttactggatgaaaacaatcagctgattcaatgtataatggacttccagagc
aaaggaaagacagcagaatgttcacagtaccagcagatgctccacagaaatttagtttac
ctggccacaatagcagactccaatcagaacatgcagtctctgctccctgctaagtgtgac
tcccctactcccccagaggtaaagcttgaacctcctactcagaacatgcccatgggccct
ggtgggatgaaccagagcggagcaccgggcccccagcctccccacggacacaacatgccc
tctgagggcatggtcagtggcggacccccagcccctcatatgcagagccagatgaacgga
cagatgcctgggcctaatcacatgcccatgcagggccctgggccgggtcccaaccagccc
cccaacatacccggcagcggctccattaacatgccccccagcagccacggctccatgggc
ggctacaaccacgctgtgccgccctctcagggcatgcctgcccaaggccaaatgaacatg
acccaaggacccatgggcaactacggcccccggcccaacatgaacatgcagcctaaccaa
gggcccatgatgcaccagcctccctcccagcagtacaacatgccccctgggggtggcggg
cagcactaccagggccagcagaaccccatgggcatgatgggccaggggaaccacgtgatg
gggcagaggtccatgcccccttacagacccccacagcaaggaccccctcagcagtaccca
gggcaggaagactactatggggaccagtacagtcacgcaggacagggagcctcagaagag
cgagacccagcagccaaccaacagtccccctatgaaaaagataatgagcgagacccagca
gccaaccaacagtccccctatgaaaaagatcatgagcgagacccagcagccaaccaacag
tccccctatgaaaaagatcatggtaacgcccagtatggccagcagcaggaggcctaccag
caaggtcctccccagcagcagggctaccccccacagcagcagtaccccggacagcagggc
taccctggaccgcaacagggctacggcccgtcccagggagccccaggccagtacccccag
ggttacccccagggccaggggcagcagtatggggcctaccggggcccccagcccggcccc
cctcaggcccagcaacaacgcccatacccaggctacgatcagggtcaatatggaaattac
cagcaatga
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