Coregonus clupeaformis (lake whitefish): 121535349
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Entry
121535349 CDS
T08357
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121535349
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121535349
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121535349
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121535349
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121535349
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121535349
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121535349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ubiquitin
TBK1_ULD
Polo_box_3
Motif
Other DBs
NCBI-GeneID:
121535349
NCBI-ProteinID:
XP_041698275
LinkDB
All DBs
Position
21:36119906..36139072
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AA seq
1639 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYINYQQ
DFEDIKWKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPDKDSEEEKSTDSVLCP
TPTETQRNSTKLLMSISAPGAVGSPDTAEAQESSEMTDSSGLRAALQEADSPERANPPSF
NVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLVECRDTIAKLDNQNMKAIKG
LEDRLYALDQMIASCNKLVNEQKELAQGFLANQNRAENLKDTSVLPDLCLSHANQLMIML
TNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMQRVR
VVDALSSVPQMYCLAVVEVVRRKIFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRK
SFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPPEVQPFLRLPTLR
DFEPLHQHVEMLQQLVLAAQAASVDEMSQTITDLLSEQRVSCSQSAQRSTTAVTPLTPRS
DSTPGTTFTSSKTPSTLSLPGPLCQPLPGPTTLEDLSPDSIDAQTFDFETISHPNMDPVL
QQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISDPTSPEMMVESLYSSVINAIDSKR
MHDTTTLERENSKMAALKLSIEKYRTAAEESQTNLRSVKDDLYRYRDLVLKEQRDFGFAL
KTMTIEVRNMVDTIRKKEEEELREQHQAELHSLQQDHEKQLQALTEENQVNQNIVKDVQR
AMLDLEGLLEHKEKALTQLEVEREHWAEAENGHTQRARDLEQKVSNQAQEVQTLAASRDS
LASQLEMLHVEIERSQQKIRQELEGAEQSHLQELEERMRQQHQAQLDTLARENQEAQEHL
ATENRAKLSDVTDLHVATLTERDGQLRDLEARVVELADLRCKLEVELALKESETEEVRLL
YEEAKQGQQEANVGKATVEAETQSLSKQLAQVNRQLQAKNEEYETGLAELRRLMRLEKDQ
CISELVDRHEEERNQLRCELTTLQQQTQDTERSRMEQLQNLQRDLDLQTVALCEDKEKQQ
RSSEEQEQHLRTVICDLQVENDLLAKGLEQDTQHLEKEKTLKAAVPDDFKDLKQQKVEME
KRLLDKIRQLENDLQERQSSEREAGLSEVQTEGRGSDAGAPLSLDSALQECLQQETSSLH
TQLELLERRKNEEMQNLKTSLFAEQQTNFNTVLTREKLKKEQIISDLTEKLRKVTQQQEK
DKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNPLALEPTGARPGPGLCP
GPGTEIEVGTGACYSEPFLDPDRLASVATIREDDRVDSAVEASMVTVHDNILMMSEEKQR
ILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNY
VLFTVGPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFK
VPLGTKFYRVKAVSWNKKV
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagagctt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagtcctggttgtcaatggaggggagtgtatggttgcagagaggcgagtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatccccaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtttttcacaccgttgcctcacgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
cacgatgaacacctccaacaccaaggctgggctgccatcatggcaaacctggatgactgc
accctttcctatcagaagctactgtggaaatttgacacggcatacattaattatcaacaa
gactttgaggatatcaaatggaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctgctggagtgtctgacccgccacagctacagagaatgcctagagaagtcc
tgctccactccagacaaggactcagaagaggagaagtccactgactctgtgctctgcccc
acccccaccgaaacacaaaggaactccaccaagctacttatgtcaatctctgctccgggg
gcggtgggctcacccgacaccgccgaagcccaggaaagcagtgagatgactgacagtagt
gggctgagggcagccctgcaggaggcagactctccagagagggccaaccccccgtccttc
aacgtcacactgctggactggatcaatgttcaagaccggcccaatgacgtggaatcagtt
gtgaggaaatgctttgactccatcaataggctcgacccacggatcattcaaccattcttg
gtggaatgtcgagacacgatagccaaactggataatcagaacatgaaagccatcaaaggg
cttgaggacaggttatacgctctagaccaaatgatagcgagctgtaacaagttggtcaat
gaacagaaggaacttgctcagggatttctggccaatcagaatcgtgctgagaacctgaag
gatacatccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatgatcatgctg
accaaccacaggaagctgctggacatcaaacagaagtgcaccactgccaaacaggaactg
gcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcacgcggatcag
gacggggagaagctgcaggccttgctgaggctgctgacagagctgatgcagcgggtccgg
gtggtggacgccctcagcagcgtgcctcagatgtactgcctggctgtggtggaggtggtc
cgcaggaagatcttcataggccactacagagagtgggcctgtgctctcgtgaaggatgga
aagcatctctatgagactgagaagtataaaagggaaacgtttggcaagttgttcaggaaa
tcttttctcagaaatcgcttgtttagaggacttgactcatggccccccacttcattttgc
acgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggtgacctgcag
tacttaaagacctgttgtcctccagaggtgcagcctttcctcaggcttccaacactgcgt
gactttgagcctttgcaccagcacgtcgagatgcttcaacaattggtgctagctgctcaa
gctgccagtgtggacgagatgtctcaaactatcactgacttactgagcgaacaaagggtg
tcatgcagccagagtgctcagagatccacgacagcggtgaccccgttgaccccgcggtcc
gacagcaccccggggaccacctttacctcctccaagaccccctccactctcagtctcccg
ggcccactctgccagcccctccctggccccaccaccctggaggacctgtccccagacagc
atcgacgcccaaaccttcgactttgagaccattagccaccccaacatggaccccgtcctg
cagcaggccggctccctggacctggactctctggctgagagccccgagtcagacttcatg
tcggcggtcaacgagtttgtgatcgaaaactcgcccacccccatcagtgaccccaccagc
ccagagatgatggtggagtcgctgtactcttcggtcatcaatgccatcgacagcaagcgc
atgcatgacaccaccaccttagagagggagaactccaagatggccgcgctaaagctgagc
attgagaagtaccgcactgccgccgaggagtcccagaccaacctgcggagcgtcaaggat
gacctgtaccgctacagagacctggtgttaaaggagcagcgagactttggcttcgccttg
aagaccatgaccattgaggtgcgcaacatggtggacaccatccgtaagaaagaggaggag
gagctgagggagcagcaccaggccgagctccactccctgcagcaggaccacgagaagcag
cttcaggccctgacagaagagaaccaggtcaaccagaacattgtgaaagatgtgcagcgg
gccatgctggacctggaggggctgctggagcacaaagagaaggcgcttacccagctggag
gtcgagagggagcactgggccgaggcagagaatggacacactcaaagggccagggacctg
gagcagaaggtcagcaatcaggcccaagaagtgcagaccctggctgcctccagagactcc
ctggccagccagctggagatgctgcacgttgagatcgagcgcagccagcagaagatccgc
caggagctggagggggccgagcagtcccacctgcaggagctggaggagaggatgaggcag
cagcaccaggcccagttagacaccctggcccgggagaaccaggaggcccaggagcatctg
gccacagagaacagggccaagctgagcgatgtcactgacctgcacgtcgccaccctgaca
gagagggacggccagctgagggacctggaggcccgggtcgtcgagctggctgacctgcgc
tgcaagctggaggtggagctggccctgaaagagtctgagacggaagaggtgaggctgctg
tacgaggaggccaagcaggggcagcaggaggctaatgtggggaaggccacagtggaggca
gagacccagtccctcagcaaacagctagcccaggttaacaggcagctgcaggccaagaac
gaggagtacgagacgggcctggctgagctgaggaggctgatgcggctggagaaggaccag
tgtatctctgagttggtggacaggcacgaggaggagaggaaccagctccgctgcgagctc
accaccctgcagcagcagacccaggacactgagaggagccgcatggagcagctgcagaac
ctccagcgagacctcgacctgcagaccgtggcgctgtgtgaagataaggagaagcagcag
aggagttctgaggagcaggagcaacacttaaggacagttatctgcgatttgcaggtggag
aacgacctgctcgccaaaggattagagcaggacacacaacatttggagaaagagaagacc
ttgaaggctgctgtaccagatgactttaaagacttaaagcaacaaaaggtggagatggag
aaaagactgttagacaaaattagacaacttgaaaatgaccttcaggaaagacaatcctct
gaaagagaggcagggttgtcggaggtgcagacagagggtcgggggtctgatgctggggct
cctctctccctggactctgccttgcaggagtgtctgcagcaggagacgtcgtcactgcac
acccagctggagctgctggagaggaggaagaacgaggagatgcagaacctcaagacctcg
ctcttcgcagaacaacagactaacttcaacactgtgctgacgagagagaagctgaaaaag
gaacagatcatcagtgatctgacagagaagctgcggaaggttacccagcaacaggagaag
gacaaaggtctaatagagacgctgtctgaagaccgggccatcgtcatgcaggagaagaag
cagttggaggaggacctgaaccggctgcgcagcactgccctggtgtcctcggcctactac
agccctaaccccttagccctggagcccactggagccaggcctggacctgggctttgtcct
ggtcctgggactgaaattgaggttgggactggagcctgctactcggagcccttccttgac
ccagacagactggcctctgtggccaccatcagagaggatgacagggtggactcagctgtg
gaggccagtatggtgacagtgcacgataacatcctgatgatgtctgaggagaaacagcgg
atactgttacttgagaggactttacatatgaaggaagaagaaaacaagcgcctcagtcaa
agactgatgtctcaaagcatgtcctcggtgtcgtcacggcattcagagaaaatcgccatc
agagatttccaggttggcgacttggttctgatcatcctagatgaaaggcatgacaactat
gtgctgttcaccgtgggtcccaccctgtacttcctccactctgagtccctcactgcactg
gacctcaaaccagatcctatgtttacttcagcatcaggagcctcaagacggccgtgggtt
cttggaaaagtgatggagaaggaatattgccaggcgaaaaaggctcaaaaccggttcaaa
gttcctttgggcaccaagttctacagggtgaaagctgtttcatggaacaagaaagtatag
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integrated database retrieval system
