Coregonus clupeaformis (lake whitefish): 121535392
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Entry
121535392 CDS
T08357
Symbol
scn12aa
Name
(RefSeq) sodium channel, voltage gated, type XII, alpha a
KO
K04838
voltage-gated sodium channel type V alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
121535392 (scn12aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121535392 (scn12aa)
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121535392 (scn12aa)
BRITE hierarchy
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ
GPHH
CcmD_alt
Presenilin
Motif
Other DBs
NCBI-GeneID:
121535392
NCBI-ProteinID:
XP_041698354
LinkDB
All DBs
Position
21:complement(48280187..48400679)
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AA seq
2014 aa
AA seq
DB search
MAAMLLPTGPDGLHRFTRESLSAIEQRIAEEQAKNAKDYQEDLGNVELPMPRPDLEASKQ
LPRIFGDIPPGLVGVPLDDIDPFYFKNQRTFIVVNKGKAIFRFSATSALYIFTPFTFLRR
ISIKVLVHSLFSLFIMCTILTNCCFMAMSDPAPWTKYLEYTFTGIYTFESMIKIFARGFC
VGPFTFLRDPWNWLDFSVISMAYLTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLADVMILTVFCLSVFALIGLQLFMGILRQKCVRSAAHCVNSSYNVNDTFTCNN
RTWNSMNDFVTNEDNFYKVEGAKDALICGYGQDAGKCPEGFDCLRIGRNPNYGYTSFDSF
GWAFLALFRLMTQDYWENLYHQTLRSAGKTYMVFFVLVIFLGSFYLVNLILAVVAMAYEE
QNQATIQEAWMKEREFQLAMEHLRREQREIKMAERRIQQETDSVMSPELSPFQLKVGSSL
RRTASRKSRRVLSEDPEEEADEKFDPLDERVSPLPPMSPMPIHPLLAAMSSHPLSTRRSS
QASIFSFRPRTTSDADFGDDEYSVHGDIMGRSRTGSAIGPNWQHKHKRTGSVRSHCSQVL
TPSLNINGRLNISLDQNGVTTVGLHTPTSLPACSMEKVKEDTEPTCIEESSPKPGQLSPE
AAEPPLRRKRGLSSVSFLSDAMDGEGTFRDLEESRQKCPPCWYTFAKAYLIWDRCPWWLK
VKEYVKMIVMDPFLDLAITICIVLNTLFMALEHYPMTDEFNNVLSVGNLVFTVIFTAEMV
FKLIAMDPYYYFQQGWNMFDGIIVCLSLMELGLSNVEGLSVLRSFRLLRVFKLAKSWPTL
NTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYQDCVCKISKDCMLPRWHMKD
FFHSFLIVFRVLCGEWIETMWDCMEVAGQPLCILVFMLVMVIGNLVVLNLFLALLLSSFS
SDNLSAPDEDGEMNNIQIAVARIHTGFAWLRRNVSDLFNGNLKKRRLVTKDVQISVKLTP
VANHVESNGGVGAVVVGVIGRYGEKVPDDDSYMTNPNLTISVPIAPGESDVEFPEEGEVE
EETESSDDEENKAEKVSLSEGSTVDLRKPGEEEDDFSETADDVMEPDECFPEFCVRHCKC
CEINTTRGLGQAWWRLRKTCYQIVEHSWFETFIIFMILLSSGALAFEDIYIEKRKVVKVI
LEYADKVFSYIFVLEMFLKWIAYGFKKYFTNAWCWLDFLIVDVSLVSLVANSLGYSDFAA
IKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAG
KFGKCVNRTGFIHNASVVNNKSECLAMNDTQFYWTKVKVNFDNVGLGYLSLLQVATFKGW
MEVMHAAVDSRGVEEQPIREINLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKRKLG
GQDIFMTDEQRKYYNAMKKIGSKKPEKPIPRPTNIFQGFLFDLVSKQAFDIMIMMLIIVN
MVTMMVETDDQSARMESILNKINLIFIVIFTTECLMKIVALRCYFFTVGWNIFDFVVIIL
SIVGIVLADIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSMPALFNIG
LLLFLVMFIYAIFGMANFAYVKKKEGIDDMFNFETFGNSMICLFQISTSAGWDNVLEPIM
SNSPEECEAYVVNTGTNVRGNCGNPSVAIAFCVSYIIISFLIVVNMYIAIILENFSVATE
ESTEPLSEDDFEMFYEVWEKFDAEATQFIEFSKLSNFADNLSEPLRIAKPNKIKLISMDL
PMVSGDKIHCLDILFAFTKRVLGDSGEMDALKQQMEEKFMMANPSKISHEPITTTLRRKQ
EDVSAIIIQRCYRRHLVKRQMKQASFLYRQMNLQTNLNLQEHIVVDIERAPEREGLIAAM
IKEHYGPEGPNEEEELVEVMGVMEGTLSSSPPSYDSLTRPGAASDLGQIERLERPRDLVL
ELREPSPSQTYRELSPSQTYRELSPSQTFEETFL
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggccgccatgctgttaccaacgggtcctgatggcttgcaccggtttactcgcgaatcc
ctgtccgccatcgagcagcggattgccgaggagcaggccaagaacgccaaggattaccag
gaggatctgggcaacgtggagctgcccatgcccaggcccgacctggaggccagcaaacag
cttccacgtatctttggtgacattcccccaggactggttggggtacctcttgatgacatc
gatcccttctacttcaagaatcagaggacttttatagtagtaaataaagggaaggccatc
tttcggttcagtgccacgtctgctctctatatatttacccctttcacattcctcagaaga
atctccatcaaagtcctagtccattcattattcagcctgttcattatgtgcactattctg
accaactgttgcttcatggccatgtcggaccctgccccttggaccaagtacctggagtac
acgttcaccgggatctacaccttcgagtccatgataaagatatttgcgagaggattctgt
gtcggaccattcaccttcctgagagacccatggaactggctggattttagtgtaatctcc
atggcatatctcacagagtttgtggacctgggaaacgtgtctgcattgagaacattcagg
gtcctcagagcgctgaagaccatctctgtcattccaggtctaaaaaccatcgttggtgct
ctgatccagtcagtgaaaaagctggcggacgtgatgatcctgacggtgttctgcctgagc
gtgttcgccctcatcggccttcagctcttcatgggcatcctgcggcagaagtgcgtccgc
agcgcggcacactgcgtcaactcctcgtacaacgtcaacgacaccttcacctgtaacaac
cggacctggaactccatgaacgacttcgtcaccaatgaagataatttctacaaagttgaa
ggagcaaaggatgccttaatttgtggatatggacaagatgcagggaaatgtcctgaggga
tttgactgtctgagaatagggaggaatcctaactatggctacaccagcttcgacagcttt
ggctgggctttcctggcgctgttccggctgatgactcaagactactgggagaacctctac
catcagactctgaggtcagcggggaagacctacatggtgttctttgtgctggtgatcttc
ctggggtccttctacctggtcaacctgatcctggctgtggtggccatggcctacgaggag
cagaaccaggccaccatccaggaggcctggatgaaggagagggagttccagctggccatg
gaacatctacgcagagaacagagggaaattaaaatggcagaaagaagaatccagcaggag
acagactcggttatgtctccagagctgtcaccgttccaactaaaagtgggcagcagtttg
agacggacagccagtagaaaatctcgcagggtgctgtccgaggatccggaggaggaagca
gatgagaagtttgatccactggatgagcgggtgtcccccctgcctcccatgtcccccatg
cccattcaccctctccttgctgccatgtcctcccaccctctcagcacgcgccgcagcagc
caggccagtatcttctccttccgaccccgtaccacctccgatgccgacttcggggacgat
gagtacagtgttcatggggacatcatggggaggagtaggacaggctccgccatcggcccc
aactggcagcacaagcacaaaaggacaggcagcgtgaggagccattgctcccaggtctta
acccccagtctcaacatcaacggacgtctcaacatctccctggaccagaacggggtcacc
actgtcggcctgcacacccccacctccctgcccgcctgcagcatggagaaggtcaaagaa
gatacagagcccacctgtatagaggagtccagtcccaagccgggccagctctcccccgag
gctgctgagcctcccctccgtaggaaacgcggtctgagctccgttagcttcctcagcgat
gccatggatggtgagggtaccttcagagacctggaagagtctcgtcagaagtgcccccct
tgctggtacaccttcgccaaggcgtacctgatctgggacaggtgcccgtggtggctgaag
gtgaaggagtatgtgaagatgattgtgatggatcccttcctggacctggccatcaccatc
tgcatcgtcctcaacaccctcttcatggcactggaacactaccccatgactgacgagttc
aacaacgtgctctctgttggcaacctggtgttcacggtgatcttcacggcagagatggtg
ttcaagctgatagccatggatccgtactactacttccaacagggctggaacatgtttgac
ggcatcatcgtgtgtctcagcctcatggagctgggtctgtccaacgtagagggactgtct
gtcctgcgctccttcagactgttgcgagtgttcaagctggcgaagtcatggcccaccctg
aacacgctgatcaagatcatcggtaactccgtgggcgctctgggcaacctgaccctggta
ctggccatcatcgtcttcatcttcgctgtggtgggcatgcagctgttcggcaagaactac
caggactgtgtgtgtaagatctctaaggattgtatgcttccccgctggcacatgaaggac
ttctttcactcgttcctcatcgtgttccgggtgctgtgcggcgagtggatcgagaccatg
tgggactgcatggaggtggccggacagccgctatgcatcctggtcttcatgctggtgatg
gtcataggaaacctggtggtgctgaacctgttcttggccctgctgctcagctcgttcagc
tcagacaacctgtccgctcccgacgaggacggagagatgaacaacatccagatcgccgtc
gcccgcatccacacagggttcgcctggctgaggaggaacgtctccgacctgttcaacgga
aacctgaagaagagacgtctcgtgaccaaagacgttcagatttctgtgaagctgacgccc
gtagccaatcacgtggagagtaacggtggggtgggggccgtggtggtgggggtgatcgga
cgctacggggagaaggtcccggacgacgacagctacatgaccaaccccaacctgaccatc
agcgtgcccatcgctcccggggagtcggacgtggagttccctgaggaaggagaggtggag
gaggagacggagtcgtcagacgacgaggagaacaaagcggaaaaagtgagcctatcagaa
ggcagcacggtggacttgcggaagccaggggaggaagaggatgacttctctgagacggct
gatgatgtcatggagccagatgaatgcttccctgaattctgcgttcgccactgtaagtgc
tgtgagatcaacacgactcggggcctgggtcaggcctggtggagactgaggaagacctgt
taccagattgttgaacacagctggttcgagacttttatcatcttcatgatcctgctgagc
agcggtgctctggcatttgaagacatctacatagagaaaaggaaagtggtgaaggttata
ttggaatacgccgataaggtcttctcctacatcttcgtcctagagatgttcctcaaatgg
attgcctacggtttcaagaagtacttcaccaacgcctggtgctggctggacttcctcatc
gtcgacgtctcgttggtgagcctggtagccaactctctgggctactctgacttcgctgct
atcaaatcactgaggaccctccgagcactgaggcccctacgggccctgtccagattcgag
ggcatgcgggtggtggtgaacgctctgattggagccatcccgtccatcatgaacgtcctg
ctggtctgcctgatcttctggctcatcttcagcatcatgggcgtcaacctgtttgcaggg
aagtttggtaaatgtgtgaaccggacggggttcatccacaacgcctccgtcgtcaacaac
aagtctgagtgcctggccatgaatgacactcagttttactggactaaagtcaaggtcaac
ttcgacaacgtgggactaggatacctctcactgctgcaagtggccacgtttaaaggatgg
atggaagttatgcatgcagctgttgattcacgtggcgtggaagagcagcccatcagggaa
atcaacctctacatgtacctctacttcgtcatcttcatcatcttcgggtccttcttcact
ctcaaccttttcatcggcgtcatcattgataatttcaaccagcaaaaaagaaagttaggt
ggacaagacattttcatgactgacgagcagcggaagtactacaacgctatgaagaaaata
ggctctaaaaagcctgagaagcctataccaagacctacgaatatcttccaaggcttctta
ttcgacctggtgtccaagcaagcctttgacatcatgattatgatgctgatcatcgtcaac
atggtgaccatgatggtggagacagacgatcagtccgcccgcatggagtccattctcaac
aagatcaacctgatattcatcgtcatcttcaccaccgaatgcctcatgaagatcgtggcg
cttcgctgctatttcttcaccgtgggatggaacatctttgactttgtggtcatcattctc
tctatcgtgggtatcgttctggctgacatcattgagaagtactttgtatctccgactctg
ttccgtgtcatcagactggcaaggataggacgcgtacttcgactgatacgtggggccaaa
ggaataaggactttactgtttgccttaatgatgtccatgccagcgttgttcaacatcggc
ctcctgctcttcctcgtaatgttcatatacgctatcttcggaatggccaacttcgcctat
gtgaaaaagaaagaagggatagatgacatgttcaacttcgagacctttgggaatagtatg
atctgcctgttccagatcagcacatctgccgggtgggacaacgtcctggagcccatcatg
tccaactccccagaggagtgtgaagcctacgtcgtcaacaccggcaccaacgttaggggc
aactgtggcaacccgtctgtggcgatcgccttctgcgtcagttacatcatcatctctttc
ctcatcgtggtcaacatgtacatagccatcatcctggagaacttcagcgtggccaccgag
gagagcaccgagccgctgagcgaggacgactttgagatgttctacgaggtttgggagaag
ttcgacgcagaggccacccagttcatcgagttctcgaagctgtcgaatttcgcggacaac
ctgtcggagccgctgcgcatcgccaaacccaacaagatcaagctgatctctatggacctg
ccgatggtgagcggggacaagatccactgcctggacatcctgttcgccttcaccaagcgt
gtgctgggcgattcaggcgagatggacgccctcaagcagcagatggaggagaagttcatg
atggccaacccgtccaagatctcccacgaaccaatcactacaactctacgccgcaagcag
gaagacgtgtcggccatcatcatccaacgctgttacagacgccacctggtgaaacggcag
atgaagcaggcctccttcctgtacagacagatgaaccttcagaccaacctgaacctgcag
gagcacatagtggtggacatagagagggccccggagagggagggcctcatcgccgccatg
ataaaagaacactacggccccgaggggcccaacgaggaggaggagctggtagaggtcatg
ggggtcatggaagggactctgtcctcctcgcctccatcttatgacagtttgacccggccg
ggggcggctagtgaccttggtcagatagaacgtctagaaaggccgagagacttagtgtta
gaactcagggagcctagcccctcacaaacatatagggaacttagcccctcacaaacatat
agggaacttagcccctcacaaacatttgaagagacatttctttga
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integrated database retrieval system
