Coregonus clupeaformis (lake whitefish): 121535408
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Entry
121535408 CDS
T08357
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121535408
09123 Folding, sorting and degradation
03018 RNA degradation
121535408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121535408
03041 Spliceosome [BR:
cclu03041
]
121535408
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121535408
mRNA degradation factors
5'-3' decay
Lsm complex
121535408
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121535408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
121535408
NCBI-ProteinID:
XP_041698382
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All DBs
Position
21:complement(49891517..49896151)
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AA seq
107 aa
AA seq
DB search
MADRNKEGEKRKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTIEYLR
DPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
324 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaacaaggaaggagagaagagaaagaaggagagtatcttcgacctgtcc
aagtacatcgataaacagatccgtgtcaagttccagggaggacgagaggccagtggagtc
ctgaaggggtttgaccccctgttgaacctggtattggacagcaccattgagtacttgcga
gaccctgatgaccagttcaagctgaccgaggacacgcgacagctgggcctggtggtgtgt
cgagggacctcagtggtgctcatctgtcctcaggacggcatggaggccatccccaacccc
ttcatccagcagcaggacggatag
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