Coregonus clupeaformis (lake whitefish): 121535410
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Entry
121535410 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor 18-like isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121535410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121535410
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121535410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
SOS1_NGEF_PH
PH_13
ATP-grasp_4
Motif
Other DBs
NCBI-GeneID:
121535410
NCBI-ProteinID:
XP_045061887
LinkDB
All DBs
Position
21:complement(49929152..49968668)
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AA seq
1011 aa
AA seq
DB search
MDDLDAARGLSPWPTPPHEDSVSTSSTDTINLEDGHYSALRAELAADALDLEGESWSVAV
DQQYVNSLHQDAVKRQDVIYELIQTEVHHVRTLKLLLSVYQYELRQSLQMEETRLERMFP
QMDNLLHVHQRFLWCLRDCRDRHNHHTVTQLGDILINQFSGEMGERMKESYGVFCSHHND
AVSFYKEQLQNNKKFQNLMTKIGRLSVVRRLGVPECILLVTQRITKYPVLVERILLNTVA
DSEEHSALAQALVLIRETISAVDSQVHDYERASRLRDIGSRLEPRSQGRWKDGRVFTRDD
LAEGSRTLLHEGTVSCRAANGRLKDIHAVLLSDVLLLLQKEKDQKLIFVNVDNKPSVISL
QMLIVREMAHEDKAMFLISASSSKPEMYEIHTSSREDCNAWMSLIRDAVDSCPAMEEQLN
SEQEEARLARLRDFRERLYMKDAQIVQSLTEKLQMFADMAEAVTGLENVAAHSRLLLRTD
ASDIQQGETLLKGAVTEVENLQNLLLSGVTVRDPHPTPEDSLRPRGFSLRPEVLRLGQGG
LGLGRLGNLAVLRRAETFGGYDCNPPTPIKYGSIPAGERPGSVEGRHQRSNSDPQLQDLD
QSESLELSLFYRVLMLSHRLYGLQAIVSQQDSHIELQRASILERERPGRPRGNMLLDQEK
QRNLEKQREEMADFHKLQTQHRQNQARWEKERERHRLQAEVLEAELRQREEECRRLEEKL
EEEREELERQRETYQQDLERLRESTRTVEKQKEHLNTQMKLKQNKTITNPGSFNFKTQQS
FRRDPPLSQSFRGDLPLSQSFRGDLMGGLTTGREVIQTPKVHVRPSLSVATNFFLEQPPE
VPPRRESISPGPPKPEFPIHLISTTNQVVHKPGAVQQQIPTKLAALGNKGKEKSSKKRPH
HQRTHSAGQNTHRAASIEMSQVVPIRVTGNESRSLRGKKTVSPHRNYQSDCFFSPPEPLS
NAKPTQTQTLLSSSSMRNTQSQAPPPEPPPPPPPFPKDITSKPTKEHVIYL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctggatgctgccagaggactctctccctggcccactcctcctcatgaggac
tctgtgtccacgtcctccacagacaccatcaacttagaagatggccactactctgccctg
cgagcggagctggcggctgatgctctggacttggagggagagtcctggagtgttgctgtg
gaccagcagtatgtaaacagcctccaccaagatgctgtaaagaggcaagatgtaatctac
gagttgatccagacagaggttcatcatgtgcggaccctgaagcttctgctgagtgtttac
cagtatgagctgagacagagcctacaaatggaggagactaggctagagaggatgttccct
cagatggacaacctgctgcacgtccaccaacgcttcctgtggtgtctcagggactgccgg
gacagacacaaccaccacactgtcacacagctgggagatatactcatcaaccagttttca
ggtgagatgggggagaggatgaaggagagttatggagtgttctgtagtcaccacaatgac
gctgtcagcttctacaaggaacagctacagaacaacaagaagttccagaacttaatgacg
aaaatcggtcggttgtccgtcgttcggcggttaggagtcccagaatgcatcctgttggtg
actcagcggatcacaaagtaccctgtcctggtggaacgcattctactgaacactgttgcc
gacagtgaggagcacagcgccctggcccaggccctggttctgatcagagagaccatctct
gctgtggactcccaggtccatgactatgagagggcctccaggctgagagacataggcagc
aggttagagcctcgttcccagggccggtggaaggacggcagggtgttcacgagagacgat
ctggctgagggctccagaaccctgctccatgaagggaccgtcagctgtcgggcggccaac
ggacggctcaaagacatccatgctgtcctgttgtcagatgtcctgctgctcttacaaaag
gaaaaggaccagaaactcatatttgttaatgtggacaacaagccatcggtgatctccctc
cagatgctgatcgtcagggagatggcccatgaggacaaggctatgttcctgatcagtgct
tcgtccagcaagccggagatgtacgagatacacacctcctccagagaggactgcaacgcc
tggatgagccttatacgagatgctgtcgacagttgtccagcaatggaggagcagctgaac
agtgagcaggaggaggccaggctagccagactccgagacttccgagagcgtctgtatatg
aaggatgcccagatcgtgcagagcctgacagagaagctgcagatgtttgctgacatggcg
gaggctgtaacagggctagagaatgtagctgcccactcccgtctgctgctccgcactgac
gcctcagacattcagcagggggagacactgctcaagggggccgtcactgaggtggagaat
ctgcagaacctgctcctgtccggtgtgactgtgagagatccccaccccactccagaggac
agtctgagaccacgggggttcagtttgaggccagaagtgctacggcttggtcaagggggg
ctaggccttgggcggctggggaacctggcggtgcttaggagagctgagaccttcggaggt
tacgactgcaaccctcccacccccatcaagtatggtagtataccggcaggagaacggcca
ggcagtgtggagggacgacatcagcgttcgaactctgacccccagctacaggacctcgac
caatcagagagcctggaactgtcgttattttacagagtgctgatgctctcacatcggctg
tacggtctgcaggccatcgtctcccagcaggacagccacattgagctccagcgtgcctct
attttggagcgtgagcgtccgggtcgcccccgaggcaacatgctcctggaccaggagaaa
caacgtaacctggagaaacagagagaagagatggccgacttccacaagctgcagacacag
caccgccaaaaccaggctcgctgggagaaggagcgggagcgtcaccggctgcaggcggag
gtcctagaggcggagctaagacagagagaggaggagtgtaggagactggaggagaaacta
gaggaggagagagaggagctggagagacagagagagacgtaccaacaggatctggagagg
ctgagggagtcaacgaggacggtggaaaaacagaaagaacacctcaatacacagatgaag
ttgaagcagaacaagaccatcaccaaccctgggagttttaacttcaaaacccagcagtcc
ttccgaagggacccccccctctcccagtccttccgaggggacctccccctctcccagtcc
ttccgaggggacctgatgggtggtttgacgacaggaagagaggtgatccagacacccaag
gtccacgtccgccccagcctctctgtagccaccaactttttcctggagcagcccccagag
gtgccccctcgcagggagagcatcagccccgggccccctaaaccggagttcccaatccac
ctgatcagcacgaccaaccaggtggttcacaaaccaggggcggtgcagcagcagataccc
accaagctggctgccctcggcaacaagggcaaggagaagagcagtaagaagaggccccac
caccagcgcacccacagcgcaggtcagaacacgcacagagcagcgtccatagaaatgtct
caggtggtgccgatcagagtgacaggaaatgagagccggagtctgagagggaagaagact
gtgagccctcacagaaactaccaatcagattgtttcttcagtcctccagagcccctgtcc
aacgctaagcccacccagacccagaccctgttgtccagcagcagcatgaggaatacccag
agccaagcacctccaccagaacctccacctccccccccacccttccccaaagacataaca
agcaaaccaaccaaggaacatgtcatctacctgtaa
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