KEGG   Coregonus clupeaformis (lake whitefish): 121535440
Entry
121535440         CDS       T08357                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030  DNA replication
cclu03410  Base excision repair
cclu03420  Nucleotide excision repair
cclu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121535440
   03410 Base excision repair
    121535440
   03420 Nucleotide excision repair
    121535440
   03430 Mismatch repair
    121535440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cclu03032]
    121535440
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121535440
Enzymes [BR:cclu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     121535440
    6.5.1.6  DNA ligase (ATP or NAD+)
     121535440
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     121535440
DNA replication proteins [BR:cclu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    121535440
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     121535440
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     121535440
   NER (nucleotide excision repair)
    Other NER factors
     121535440
   MMR (mismatch excision repair)
    Other MMR factors
     121535440
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 121535440
NCBI-ProteinID: XP_041698446
LinkDB
Position
21:complement(54683963..54705659)
AA seq 1121 aa
MQRSISSFFQPKTGKEKESEKSDGPVKEKPVKEKPVKEKPVKEKPVKEKPEPVKGPLKVQ
NGVHNEPDSPVKKFTKRSRQILDSDDDEAPARIEQEQGDKTVQPKDEVYKAVTTPLSPAA
PTTPVTPATPVTPAAPPVTPAAPPVTPAAPPVTPAATPVTPAGTPVTPATSATTGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSDKEEEEVKEEPEQQNKRAKVEETQGSTENEE
EAMEVGGEENSVDKPEVVQNNPEQKEIDEEKTKDGEKEKALDVKETEEEGKSPKSEEAKE
RSPKGQEAKGKSPKGQNAKERSPKGQEAKGKSPKGQNAKERSPKGQKAVKEEKESPKNER
KAVKEEKEMKVSESPQAKKAPTISSFFAPRKAAVKMERPEEKSEGDRKEKSEGDRKEKSE
GDRKEESEGDRKEESEGDRKKSGENIKEGAKVARTTDDVKEKGEKTDQAQYDPSRPNYHP
VDHACWGRGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVIVLSPEDLLCCVYLCL
NQLGPAYMGLELGVGETVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRIMFQ
PANLIAGGVFNKLKDIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLA
EQSVLAALSHAVCLTPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLILKQTYCEMPNYDV
IIPVILKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQ
IHILENGEVRIFSRNQEDNTTKYPDIISRIPTVKKQSVVSCVLDSEAVAWDREKQQIQPF
QVLTTRKRKDVDAADIKVQVCVYAFDLLYLNGESLVKQPLSRRRALLRESFQEKEGEFVF
ARAIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGD
TMDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEH
ILPKPRPYYRVDQSTEPDVWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRF
LRIREDKKPEEATSGGQIADLYRKQQVVQNQGDKADLEDYY
NT seq 3366 nt   +upstreamnt  +downstreamnt
atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagaaaaggagagcgaa
aagagtgatggaccggtgaaggagaaaccggtgaaggagaaaccggtgaaggagaaaccg
gtgaaggagaaaccggtgaaggagaaaccagaaccagtcaaagggcctctcaaagttcag
aatggggtccacaatgagcctgattcgccagtaaagaagttcactaaacgcagtcgtcag
atcttggacagtgatgatgatgaggctccagccagaatagaacaggagcaaggggacaag
actgttcagcccaaggatgaagtatacaaggctgttaccaccccactgtcccccgctgcc
cccaccacccctgttactccagccactccagtgaccccagccgcccctccagtgacccca
gccgcccctccagtgaccccagccgcccctccagtgaccccagccgccactccagtgacc
ccagccggcactccagtgaccccagccacctccgccaccactggaacccctgacaccccc
acttccatctcaccctccggaattcccaaacgccgcaccgcgaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgacaaggaggaggaagaggtgaaggaagaacca
gaacagcagaataaaagagcaaaggttgaggaaacacagggcagcaccgagaatgaagag
gaagcgatggaggtgggaggagaggagaacagtgtggataagcctgaggtggtgcagaac
aacccagagcagaaagagatcgatgaagagaagaccaaagatggagagaaggaaaaagca
cttgatgtgaaagagacggaggaggagggaaaaagtcctaaaagtgaagaggctaaagag
agaagtcctaagggtcaagaggctaaaggaaaaagtcctaagggtcaaaacgctaaagag
agaagtcctaagggtcaagaggctaaaggaaaaagtcctaagggtcaaaacgctaaagag
agaagtcctaagggtcaaaaggctgtaaaggaagaaaaggaaagtcctaaaaatgaaagg
aaggcagtaaaggaggagaaagaaatgaaagtgtcagaaagcccccaagccaaaaaagcc
cccaccatcagcagtttctttgctcccaggaaggctgctgtaaagatggagagaccagag
gagaagagcgagggagacagaaaggagaagagcgagggagacagaaaggagaagagcgag
ggagacagaaaggaggagagcgagggagacaggaaggaggagagtgagggagacagaaag
aagagcggggagaatataaaggagggggcgaaggtggcccgtaccactgacgacgttaaa
gagaaaggagagaagacggaccaggcccagtatgacccatccagacccaactaccaccca
gtagaccacgcctgctgggggcggggacagagggtcccgtatttggctgttgcacgcacc
tttgaaaagattgaggaagattctggcagattgaggaacatcgaaacattatcaaatctc
ctacgctctgtgatcgtcctctctccagaggacctgttgtgctgcgtctacctgtgtctc
aatcagctgggtcctgcttacatggggctggagctgggagtgggagaaactgtactgatg
aaggctgtcgcccaagcaactgggcgacagttggacaaaatcaaggcggaggctgcagag
aagggggacttggggttggtggctgagagttcccgtaacaaccagagaattatgttccag
ccagccaatctgattgcagggggtgtgttcaacaaactgaaagacatcgggaacatgagt
gggaactctgccatgaataagaagattgacatcatcaaaggtctttttgtagcctgccgt
ttctctgaagccagatacatagtcaggtcgctggcagggaagctgaggattggcttggct
gaacagagtgtactggctgccctgagtcacgccgtgtgtctgactcctccgggacaagac
ttccctccggcggtgattgacgctgggaaaggaatgagtgcagaaaaacagaaagcttgg
atagaagagaaaagccttatcctcaaacagacttactgtgagatgcccaactatgatgtc
atcatcccagtcattctgaaggaggggattgatgaactacccaaccactgcaaactcact
ccaggtgtaccgctgaggcccatgctggctcaccccaccaaaggtgtaggagaggtgatg
aagaggttcgatgaagccgccttcacctgcgagtacaagtatgacggagaacgagcacag
atccatatcttggagaacggagaagtgcgtattttcagtcgcaaccaggaggataataca
accaaatatcctgacatcatctctcgcattcctacggtaaagaagcagtcggtggtatcc
tgtgtgttggactctgaggcagtagcttgggacagagagaagcaacagatccaaccattc
caggttttaaccacacggaagagaaaggatgtcgatgcagctgatatcaaggtccaagtg
tgtgtgtatgccttcgaccttctgtatctcaatggagagtctctagtgaagcagcccttg
tcccgtcgcagggctctgttgagggagagcttccaggagaaggagggagagtttgtgttt
gcccgcgccatcgactcagacaacacagacgccatcgctgagttcctggagcagtcggtt
cgagactcctgcgagggactcatggtgaagactctggagaaagatgccacgtatgaaatc
gccaagcgctctcacaactggctcaagctgaaaaaggactatctggatggcgtgggggac
acaatggatctgtgtgtgatcggagcgtatctggggaagggcaagagaaccgggacctac
ggaggctttctgctcgcatgctacgacgaggacaacgaagagttccagtcagtctgcaag
attgggacaggtttcaaggatgaagatttggagcagcattacaaattcttaaaggagcat
attttgcccaagccccgcccctattaccgtgtggaccaatcaactgagcccgacgtgtgg
ctcgatgccgtgcaagtatgggaagtgaagtgtgccgacctatcgctgtcgccgatctac
aaggctggcatgggattgtgtgacccagagaagggcatctctcttcggttcccgcgcttc
ctgaggatcagagaggataagaagccagaggaggccacttcaggaggacagattgctgat
ttatacaggaagcagcaggttgttcagaatcagggcgacaaagctgaccttgaggactac
tactga

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