Coregonus clupeaformis (lake whitefish): 121535490
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Entry
121535490 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121535490
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
121535490
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GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121535490
NCBI-ProteinID:
XP_045061830
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Position
21
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AA seq
1057 aa
AA seq
DB search
MKNFTPGGGAAATATRKNSTNNEPSLLQAEGAPAATKLTVASKATDTTTCPGDAAGRGET
NRAAGAEASGAAVAVEVLNAAAGDACNTTAPILRMKCNKNGECRRDSGTGSLRSIISNKT
AGAGRAEDSSLRRGACNSARASMDGSTTGSMTQGQGEGSVNPGVTPVSTGVPEKKDSRVS
FSNAPSRKASSSLHGSTQTQTTQQPRNSVTFQKPEDGPQIQAEDAEPDGSTFMQRQFSAM
LQPGVNKFSLRMYGSQKAVEREQERVKSAGNWIIHPYSDFRFYWDFTMLLFMVGNLIVIP
VGITFFNDGTTTPWIIFNVISDTFFLMDLVLNFRTGIIIEDNSDIILDPKTIKWTYLKTW
FIVDFVSSIPVDYIFLIVEKGIDSEMYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQW
EEIFHMTYDLASAVMRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPQDCWVSLNKMVNDTW
SELYSFAVFKAMSHMLCIGYGRQAPESLSDIWLTMLSMIVGATCYAVFIGHATALIQSLD
SSRRQYQEKYKQVEQYMSFHKLPSDFRQKIHDYYEHRYQGKMFDEDSILEELNEPLREEI
VNFNCRKLVASMPLFANAEPNFVTAMLIMLRFEVFQPRDYIIREGTIGKKMYFIQHGVCN
VITKGTLGMKLSDGSYFGEICLLTRGRRTASVRAETYCRLYSLSVDNFNEVLEEYPMMRR
AFETVAIDRLDRIGKKNSILMHKVQHDLNSGVFNNRENEMIQEIVKYDREMVKLVDLQRP
RTMSMTSSVPGGMFSPAGPSGVGALASLQQAVAMSFCPQGMGPMAGSGTLQSPRMLRRFQ
VVHSLSQSPVSAPLQSQPPQMAHATGVFGSAISSPPVQSPLAHPGRTFQYMGGAGPSGSQ
LSLVQHHVPSPTHTIQRPSSHKSTHSLHSGTLSQDARGLSASQLSLPQDGTPPAAPSPPQ
STHPSTHASSTSIGPPQPTHPSQPGPSGVGVQVGGRPAXSSTAGGLRLHSSPGGAPGMGA
AAAAAGSGLPASGAPKKDSIVSIPELDLARKRLSSNL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactttacgccaggagggggagccgcggccacggctaccagaaagaactcaacc
aacaacgagcccagcctactgcaagcagagggtgcgcctgctgctactaagctcactgta
gcatccaaagcgactgataccacaacctgtccgggagatgctgccgggcgcggcgagacc
aacagagcggcaggggcggaggcgtctggagcagctgtcgcagtagaggttttaaacgcg
gcagcaggtgatgcttgcaacaccaccgctccaattttaagaatgaaatgcaacaaaaac
ggagaatgcaggagggactccggcaccgggagcctgcgctcgatcatctccaacaagact
gccggggcggggagggccgaggactcgtcccttaggcgcggtgcttgtaactcagccagg
gccagcatggatggctccacgacagggtccatgacgcagggccagggggaaggtagcgta
aaccccggcgtcaccccggtttccaccggcgtccccgagaaaaaggactccagggtgtcc
ttctccaacgcgccgagcaggaaagcgtcctcatcgctgcacggctcgacccagactcag
acgacccagcagcctagaaactctgtcaccttccagaagcccgaggatggaccccagatc
caggccgaggatgccgagcctgacggaagcaccttcatgcagcgacaattcagtgccatg
ctgcagcctggagttaacaaattctccttacgcatgtatgggagtcaaaaggcggtggag
agggagcaagagcgggttaaatcagcgggcaattggattatccacccctacagtgatttc
aggttctactgggatttcacaatgcttctcttcatggtgggtaacctgattgtcatcccg
gtgggcatcacctttttcaacgatgggacgaccaccccctggatcatcttcaacgtcatc
tccgacaccttcttcctcatggacctggtcctcaacttccgcacgggcatcatcatcgag
gacaactctgacatcatcctggaccccaagaccatcaagtggacgtacctgaagacctgg
ttcatcgtggactttgtctcctcgatccccgtggattatatcttcctgatcgtggagaag
gggatcgactctgagatgtataagacggccagggccctgaggatcgtacgcttcactaag
atcctgagtctgctaaggctgctgaggctgtcccggctcatccgctacatccaccagtgg
gaagagatctttcatatgacctatgacctggccagtgcagtgatgcgtatcttcaacctg
attggtatgatgctgctgctgtgtcactgggatggctgtctgcaattcctggttcccatg
ctgcaggacttcccccaggactgctgggtctccctcaacaagatggtgaatgacacgtgg
tctgagctgtattcgtttgcagtgttcaaggcgatgagccacatgttgtgtatcggctac
ggtcggcaggccccggagagcctgtctgatatctggctcaccatgctcagcatgatcgta
ggggccacctgctacgctgtgttcataggccatgccacagcactcatccagtccctggac
tcgtcccgacgacagtatcaggagaagtacaaacaagtggagcagtatatgtccttccac
aagctgccatccgacttccgacagaaaatccatgactattatgaacaccggtaccagggg
aagatgtttgatgaagacagcatcctggaggagctgaacgaaccactcagagaggaaatt
gtaaatttcaactgccgtaagctggtggcgtccatgccgttgttcgccaacgcagagccc
aactttgtgacagccatgctgatcatgctccgcttcgaggtcttccagccccgtgattac
atcatcagagagggcaccatcggcaagaagatgtactttatccagcacggagtctgtaac
gtcatcaccaagggaaccctgggaatgaagctctctgatggctcctactttggagagatc
tgtttgctgacgcggggtcggcgtacggccagtgtcagagcggagacgtactgccgtctc
tactccctgtctgtggacaactttaatgaggtcctggaggagtaccccatgatgagacgg
gcatttgagaccgtggctatcgaccgacttgaccgcataggcaagaagaactccattctg
atgcacaaagtgcagcatgacctcaactccggcgtcttcaacaatcgtgagaatgagatg
atccaggagatcgtcaagtacgaccgtgagatggtcaaactggtggacctccagagaccc
cgcaccatgtccatgacttcctccgtccctgggggtatgttctcccccgcaggcccgtcc
ggggtcggagcccttgccagcctccagcaggctgtggccatgagcttctgcccccagggg
atggggccgatggcagggtcagggacactgcagtccccccgcatgttgcggaggttccag
gtggtccatagcctgtctcagagcccagtttccgctcctctccagtctcagccaccacag
atggctcatgcaacaggggtgtttgggtcggctatttccagcccaccagtccagagccct
ctggctcatccgggacggacattccagtacatggggggagcggggccgtctgggtctcag
ctgtccctggtgcagcaccacgttcccagccccacgcacaccatccagaggccctcctca
cacaagagcacccactcgctccactcaggaaccctgagccaggatgcccgtggcctctct
gcctcccagctctccctccctcaggatggaacccctcctgccgcccccagccctccccaa
tctacccacccatccacccacgcctcatccacctccatcggcccccctcagcccactcac
cccagccagccggggccctccggggtgggggtccaggttggggggagacccgcgnggagc
tccacagcgggtggccttcgcctccactcctccccaggaggagcacccgggatgggggcg
gctgcagcggcggctgggtcggggcttccggcctctggagctcctaagaaggattcgatc
gttagcataccggagttagacttggcccggaaacggctgtcttccaacttgtga
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