Coregonus clupeaformis (lake whitefish): 121535498
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Entry
121535498 CDS
T08357
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121535498
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121535498
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
I-set
Ig_3
ig
LRR_14
Ig_2
LRR_LRWD1
LRR_6
LRRNT
LRR_9
V-set
C2-set_2
Motif
Other DBs
NCBI-GeneID:
121535498
NCBI-ProteinID:
XP_041698559
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Position
21:complement(39685270..39778343)
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AA seq
627 aa
AA seq
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MTTRAMIGSPGPSGLSLSLWRWASLCGPVLLLVAMTTLLPGCCQACPPRCECSAQIRSVL
CQRRRLTGIPEGIPTETRLLDLSRNRLRWVEMGDLAPYPHLEEVDLSENLIATLEPKAFA
NLQSLRVLRLRGNQLKLVPMGAFAKLVNLTTLDLSENKLVILLDYTFQDLRSLRHLEVGD
NDLVYISHEAFSGLLGLEDLTIERCNLTSISGQTLSYLRSLVTLRLRQLSIPTLEDQNFR
KLTNLRGLEIDNWPYLEYISPLSFQGLDLYWLSITNSNITSVPSSSFRNLIHLTHLNLSY
NPITTLEPWAFRDLLRLKELIMVNTGLATVEPHSLGGLRQIRVLNFSSNDLQTLEERSFH
SVNSLETLRVDGNPLLCDCRLLWILQRRKTLNFDGRVPVCAGPVEVQGNSLSTFTDSALF
DHFTCQKPKIRNRKLQQVTAREGQPVSFLCSAVGEPTPNIMWISPQRRLITAKSNGRITV
LPGGTLEIRYAQVTDSGTYMCIASNAGGNDTYFAVLTVRGVPLDAASAFFANRSMYGGEF
FNDTNMNSTRVFLKFTLDLTTILVSTAMGCITFLGVVLFCFLLLFAWSRGRGQRKNNFTV
ETPFRKAEGPAAAGGAGGARKFNMKMI
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccagggccatgattggctccccgggccccagtgggctgtccctgtcgctgtgg
cggtgggcgagtctctgtgggccggtcctgctgctggttgccatgacaaccctactgcca
ggttgttgccaggcatgccctccacggtgcgagtgctcggcccaaatccgttccgtcttg
tgccagcggcggcgcctcaccggcatcccagagggcatccccacggaaacgcgcctcctg
gacctcagccggaaccggctccgctgggtggagatgggcgacctggcgccgtatccgcac
cttgaagaagtggacctgagtgagaacctcatcgccacactggagcccaaagcgttcgcc
aacctgcagagtctccgggtgttacggctgagggggaatcagctgaagcttgtacccatg
ggggccttcgccaagctggtcaacctgaccacgctggacctgagcgagaacaagctggtg
attctgttagactacaccttccaggacctgaggagtctaagacacctggaggtgggagac
aacgacctggtctacatctctcatgaggccttctctggtctgctagggctggaggatctg
accatcgaacgctgcaacctgacttccatctctggccagacgttgtcctacctacgcagc
ctggtcactttgcgactacgccagctcagcatccccacactggaggaccagaacttccgc
aagctgaccaacctgcgggggctggagatcgacaactggccctacctggagtacatctcc
cccctgagcttccagggcctggacctgtactggctgtccatcaccaacagcaacattacc
tccgtcccctcgtcctccttcagaaacctgatccacctcacccatctcaacctgtcctac
aaccccattaccaccctggagccttgggccttcagggacctgctgaggctcaaagagctg
atcatggtgaacacaggcttggctacggtggagccccactccctgggaggcctcagacag
atccgggtcctcaacttctcctccaacgacctccagaccctggaggagcgatcgttccac
tccgtcaacagcctggagacgctgcgggtggacgggaacccgttgctgtgtgactgccgt
ttgttgtggatcctgcagagacgcaagaccctcaactttgacggcagggtgcctgtgtgc
gctgggccggtggaggtgcaggggaacagcctcagcaccttcaccgactcagcgctcttt
gatcacttcacctgccagaagcccaagatacgcaaccgcaagcttcaacaggtgacggct
cgtgagggccagccagtgagtttcctctgcagtgctgtaggagagcccacccccaacatc
atgtggatctcccctcagcgcagactaatcacagccaagagcaacggccgcatcaccgtc
ctcccaggagggactttggagatccgctatgcccaggtcaccgacagcggcacctacatg
tgcatcgccagcaatgccggaggcaacgacacctacttcgcggtgctcaccgtccggggc
gtgccgctggatgccgcgtcggccttcttcgccaaccgctcgatgtacggcggcgagttc
ttcaacgacacaaacatgaatagcacgcgcgtcttcctcaagttcactctggacctgacc
accatcctggtctccacggcgatgggctgcatcaccttcctgggcgtggtgcttttctgt
ttcctgttattgtttgcatggagccgggggcggggtcagcgcaagaacaacttcactgtg
gagacccctttccggaaggccgaggggccggcggcggcgggtggcgccggaggggcccgg
aaattcaacatgaaaatgatatga
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