Coregonus clupeaformis (lake whitefish): 121535507
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Entry
121535507 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-beta isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121535507
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121535507
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121535507
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121535507
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121535507
NCBI-ProteinID:
XP_041698574
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Position
21:39208988..39225439
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AA seq
503 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYSEVQKHQKNQEVLNQEVLSQGCLNQG
LSLTREDVAGGDSEGDRHRELSHSYSSGGSSSTLSDLDDIPDLFDLPLTPEEAHEYCSLE
LLGGHGGSTGNTSNSSSSSSSSNNSSNQNSPQQNLLDVTDANGIKHEYQMLSHTQAALLE
PLADDCTLMDIERITQSVVKSHLETSQYSSDDLKRLTYSGIQYSPEETRNFQCKSEEFMW
QQCAHHITNAIQYVVEFAKRITGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNANTNTMF
FDGKFASAQLFKALGCDDLVSAVFDLAKGLCRLQLTDEEMALFSAAVLLSPERPWLTDSQ
KVRKLQEKLFLALQHSLHMSGAADEKLDQMVSKLLLMKSICNLHVDKLEFFRLVHPETAY
SFPPLYREVFGSEISLPDSTNSS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatagaagtaataccctgcaagatctgtggggacaagtcctcaggtatc
cactatggggtcattacctgcgaaggctgcaagggatttttccgccgcagccagcagaac
aatgccatgtactcgtgttcccgccagaggaactgtcttattgaccgaaccaaccgcaac
cgctgccaacactgcagactgcagaagtgtctggctttaggcatgagccgggacgctgtg
aagtttggccgtatgtctaagaagcagcgagacagcctgtactctgaggttcagaagcac
cagaagaaccaggaggttctgaaccaggaggttctgagccaggggtgcctgaaccagggt
ttgtccctgaccagggaagacgtagctgggggagacagtgagggggacaggcacagggag
ctcagtcactcctacagcagcggcggctccagctccaccctgagtgacctggatgacatc
cccgacctgtttgacctgcccttgaccccggaggaggcccacgagtactgcagcctggag
ctgctgggaggccacggcggaagcaccgggaacacctccaactcttcgtcatcgtcatca
tcctctaacaattcgtccaatcagaactcgccacagcagaatctgctggatgtcacagac
gccaatgggatcaaacatgagtaccagatgttgtcgcacacacaagccgcgctgctggag
ccactggccgatgactgcactcttatggatatagagcgtatcacccagagtgtggtcaag
tcccacttggagacgagtcagtacagttctgacgacctgaagaggctgacatacagtggg
attcagtactcacctgaggagacccgcaacttccagtgcaagtctgaagagtttatgtgg
cagcagtgtgcccaccacatcaccaatgccatccagtatgtggtggagtttgccaaacgc
atcaccggcttcatggacctatgtcagaacgaccagatcattctgctcaaagctggctgt
ctggaggtgctgttgatcaggatgtgcagggcgtttaacgctaacaccaacaccatgttc
tttgatggcaagtttgcctctgcccagctcttcaaagcccttggttgcgatgacctggtc
agtgccgtgtttgacctggctaaaggtctctgccgcctgcagctgaccgatgaggagatg
gctctgttcagcgccgctgtccttctgtccccagagcgaccatggctgactgacagccag
aaggtccggaagcttcaggagaagctcttcctggctctgcaacacagtctgcatatgagc
ggggccgccgacgagaaactagaccagatggtgtccaagctgctgctgatgaagtccatc
tgtaatctccacgtcgacaagctggagttcttccgtctggttcaccccgagaccgcatac
agcttcccaccactctatcgggaagtgtttgggagtgagatctctctccccgactctaca
aacagctcctag
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