Coregonus clupeaformis (lake whitefish): 121535524
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Entry
121535524 CDS
T08357
Name
(RefSeq) integrin alpha-6
KO
K06485
integrin alpha 6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382
Cornified envelope formation
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04518
Integrin signaling
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121535524
04514 Cell adhesion molecule (CAM) interaction
121535524
04518 Integrin signaling
121535524
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121535524
09142 Cell motility
04820 Cytoskeleton in muscle cells
121535524
04810 Regulation of actin cytoskeleton
121535524
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121535524
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121535524
04515 Cell adhesion molecules [BR:
cclu04515
]
121535524
04090 CD molecules [BR:
cclu04090
]
121535524
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121535524
Exosomal proteins of breast milk
121535524
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin alpha subunits
121535524
CD molecules [BR:
cclu04090
]
Proteins
121535524
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
FG-GAP_2
LYRIC
Motif
Other DBs
NCBI-GeneID:
121535524
NCBI-ProteinID:
XP_041698601
LinkDB
All DBs
Position
21:38083423..38124643
Genome browser
AA seq
1058 aa
AA seq
DB search
MGDRWIQFLSSLSLLFLLEWTQISAFNLDTENVLIMNGEPGSLFGFSLAMHRQLDPVDKI
MLLVGAPKAKALGGQKSKVTGGLYNCDTTSSSCKRVEFDNNENLKTESKENQWMGVTVNS
QGPGGKIVTCAHRYQMRLFVSTPQESRDITGRCYVLSQDLTINAQSDEDGGNWRFCEGRA
RGHERFGSCQQGLSATFTRDYEYLVFGAPGAYDWKGMVRVEHKNNTLLEMRSYKDGPYEV
GDENQLNPDLVPVPPNSYLGFSLDSGKYITKKGQLTVVAGAPRAHHSGEVVLLKKESDVS
SMLSPEYILEGEGLASSFGYDLAVVDLTGDGWQDIVVGAPQFFEKDGKVGGAIYAYINKG
GVWSKLTPTRIDGPQDSMFGLAVENLGDLNLDGYQDIAVGAPYDDNGAGKVFIYHGSAQG
INIKPAQVLSGVPSKTRLFGYSLAGNMDLDRNSYPDLAIGSLSDSVFVYRARPVINIQKV
VKTVPKEIDLTKKNCGNSICLEVEACFSYTANPKSYNPKLTVAYSFEAEVERRKKGLPPR
VTFSTRSSEDHDYESTGVLTLSAQGKKECVTAKLTLQENIKDKLRGIPIEVTVEIQNSKR
KRRALPGLMPILDSNQPITARAEVSFLKEGCGSDNVCQSNLQLQHRFYYREPNKDIFILL
PVENGVPVVSLSDQTDIALEITVTNQNGDDAHEASLVASFPSSLSYSASRSAPNADRQVT
CVANKNGSQADCELGNPFKRDSEVKFYIILSTAGISLNTTELEIDLKLETTSDQQKVGGV
KAKAKVVIELQLSLTGVAKPSQVYFTGEVKGESAMKSEGDIGSPIEYEFRVINLGKPLKT
YGTASLIINWPKETVEGKWILYLVKIDSQGLEQITCSPEREINPLTVKEERSSSRRRRAV
GETDKPEGTIALLTDKRKYTTLSCEDGAKCVEIRCSIKGLDSNAVILLRARLWNSTFLEE
YSKLNYLDVIVKASLRVDGTAKNMVLRNPETQVRVTVFPERRVAQYGGLPWWIILVAILL
GLLLLGLLVFLLWKCGFFGKKKEDAPPSDKERLTPSDA
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggggatagatggatacaattcctctcatctctatcgcttctctttctcctggaatgg
acgcaaatatcagctttcaacctggacacagaaaacgtcctgataatgaacggagagccc
gggagcctttttggcttctctctcgctatgcaccggcagttagatccggtggataagata
atgttgctggttggtgctccgaaggccaaagctctaggaggtcagaagtcaaaggtcaca
ggaggactctacaactgtgacaccacttcctccagctgtaaacgtgtggagtttgacaac
aatgagaacctgaaaactgagagtaaggagaaccagtggatgggtgtaacagtgaacagc
cagggaccaggaggaaagattgtgacgtgtgcccaccgctaccagatgcgtctgtttgtg
agcacgccccaggaatctcgtgacatcacagggaggtgttatgtgctgagccaggacctg
acaatcaatgcccagtctgatgaggacggagggaactggaggttctgtgaggggcgggca
cgtgggcatgagaggtttggctcatgccaacagggtctgtctgccaccttcactagggac
tatgaatacctagtgtttggagctcctggagcatacgactggaaaggtatggtgagagta
gagcataagaacaacactctgttggagatgcgttcgtataaagacgggccctatgaggtg
ggtgatgagaaccagttaaacccagacctggtccctgtgccccctaacagctacctgggc
ttctctctggactcggggaagtacatcactaagaagggtcagctgacagtggttgcaggg
gctccgagagcccatcacagtggagaggtggtgttgctaaagaaggagtccgatgtatcc
tccatgctgtcaccagagtacatcctggaaggggaggggctagcctcatcgttcggctac
gaccttgctgtggtggatctcactggagacgggtggcaggatatcgtggtgggagcccct
cagttctttgagaaggatggaaaggtgggcggggctatttatgcctatattaacaagggc
ggagtctggagtaagctcacacccaccaggatagacggacctcaggactccatgttcgga
ctggctgtagaaaacctgggagatctcaacttggacggttatcaggacattgctgtggga
gcaccatatgatgacaatggggcagggaaagtgttcatctaccatggctcagctcagggc
attaatatcaaacctgcacaggtgttgtcaggggtgccatcaaagacgaggttgttcggt
tattctctagctggtaacatggacctggacaggaattcctaccctgacctggccatagga
tctctctccgactctgtgtttgtctacagagctcggccagtcatcaacatccagaaggtt
gtcaagacagtgccaaaggagattgatctgactaagaagaactgtggcaacagcatttgc
ttggaggtagaggcctgtttctcctacacagccaaccctaaatcctataaccccaaactg
acggtagcgtactcctttgaagcggaggtggagcgtaggaagaagggtcttccccccaga
gtaaccttctccacacgttccagcgaggaccatgactacgagtccactggtgttctcacc
ctcagtgcacagggcaagaaggagtgtgtcaccgccaaactcactctacaggagaacatt
aaggacaagcttaggggaatccccatcgaggttaccgtggagatacagaactccaaaagg
aagagaagagcgctcccagggctcatgcccatcctcgactccaaccagcctatcacggcc
cgcgctgaggtgagtttcctgaaggaaggatgtggcagtgataatgtgtgtcagagtaac
ttacagcttcagcaccgcttctactacagagaacccaacaaggacatcttcattctacta
cctgtggagaatggggtgccagtggtctcccttagcgaccagacggacatcgccctggag
atcacagtgaccaatcagaatggagatgatgctcatgaggcgtcattggttgcctccttc
ccctcctctctctcctactccgcctcccgctctgcacccaacgcagacaggcaggtgacc
tgtgtggccaataagaatggctctcaggcagactgtgagctggggaaccccttcaagcga
gactcagaggtgaagttctacatcatcctgagtacagcaggcatctctctgaacaccaca
gagctggagatagacctgaagctggagacgacaagtgaccagcagaaggtgggcggagtc
aaggccaaggccaaagtggtgatcgagctgcagctgtccctcacaggagtggccaagccc
tcccaggtctatttcactggagaggtcaaaggtgagagcgccatgaagtcagagggagac
atcggcagcccgatcgagtacgagttcagggtgatcaacctagggaagcccctgaagacc
tatggcaccgcctccctgatcatcaattggccgaaggaaaccgtggaggggaagtggatc
ctgtacctggtgaagattgactcccaaggtctggaacagatcacatgctctccagagaga
gagatcaacccactcactgtcaaagaggagaggagcagtagcaggaggaggcgggctgta
ggggagacagacaaacctgagggaaccatcgcactgctgactgacaagaggaaatacact
actctgtcgtgtgaggatggggcaaagtgtgtggagattcgctgctccataaagggcctg
gacagtaatgcagtcatcctgctcagggctcgcctctggaacagcacattcctggaggag
tactccaagctgaactatctggacgtgatagtgaaagcctctctcagagtggacggcaca
gctaagaacatggtcctgaggaaccctgagacacaggtgagagtgacagtgttcccagag
cgtcgtgtggctcagtacggaggactgccatggtggatcatcctggtggccatcttgtta
ggactgctgctgctcggcctgctggtcttcctgctctggaagtgtggtttcttcgggaag
aagaaagaggatgcccctccctctgacaaagagcgattgacgccgtctgatgcataa
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integrated database retrieval system