Coregonus clupeaformis (lake whitefish): 121535748
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Entry
121535748 CDS
T08357
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X3
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121535748
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121535748
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121535748
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121535748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
121535748
NCBI-ProteinID:
XP_041698939
LinkDB
All DBs
Position
21:57545061..57583602
Genome browser
AA seq
2267 aa
AA seq
DB search
MAISTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRVHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALRKLQSNTAGFKLKDFLRDKETLSLFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDSLLESLGALAVELASMKSWKEMRNEIHYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNDSDDEPVSAYDNTSTPY
CNSMMRSLEASPISRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWTFMESSEEMDLVRTLLQNNASARFFNDRLAGTEWKVEDMSRFLTKAAEDK
RPAGSAYTWREVFNETDEAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSVLPANVNYKIRMDIDNVERTNKIKDNYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIIRAVTGSMEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIASLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSVSYSKKEDSVSESSSDAGLGSEPESEATTIDVTMISNVIFKHVPAAR
LVEDLGHELTYVLPYKAAKGGAFVELFHEIDDRLSDLGISSYGISDTTLEEIFLKVAEDS
GVDAAELPNSDGTIPARRHRRHAFGDHQSCLKPFTEDDAFDFNDSEGDPESRETDWLGGS
DGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF
GKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFGSRCSSPHAPCNTLDDE
WAVPEIPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPAGAGGLPPPQVKISDKG
TLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGARNTQFLPPGDDIDQAI
SEIRRRFHLERGTAADRFLVSLSSFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNNGILR
ASLPAGQDPSKYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVF
LIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVIIIFICFQQDAYVSSTNL
PVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNE
IGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLFA
MAVQGVVFFTITVLIQYRFCIKARSMSTDQKPIGEEDEDVARERQRILGGGGQSDILELK
QLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSMVTSGEAYLAGK
SVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGLI
KYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIVKEGR
SVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLRPV
MEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKEWLHIEDYSVSQTTLDQ
VFVNFAKDQSDEDHLKDISMHKRDAVAVDITQLKSFLTDEKARESCV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atggccatctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctaattatcgagataatatggccgctcttcatcttcttcatcctcatc
tctgtgagggtgcattacccaccctacgagcaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaaggtatcatctgtaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctgaggaaactacaaagcaacacggca
ggtttcaagctgaaggactttctccgtgataaggagaccttatcgttgttcctgcatcgt
aacgcctccctatcccatcatgccgtccagcagattgtagaggccgacctcaacctagag
aaggtcctgattggaggctttggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggatcacttcctgtccaacctggacttc
ctgaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacagtctactagagagcctgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggccaacgccacaggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggtcaccccgagggcggcggactg
aagatcaagtccctcaactggtacgaggacaacaactacaaggcactgttcggtaaccac
ggcggcaacgacagtgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagctagccccatctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctgtacacccccgacactcccgccacacagagg
atcatacacgagatgaacaagacattccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaccttcatggagagcagcgaggagatggac
ctggttcggacactgcttcagaacaacgccagtgcccgcttctttaatgaccgtctggct
ggtacagagtggaaggtggaggacatgtcccgcttcctgaccaaggctgcagaggacaaa
cgtcccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgaggctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagaaccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgttcccggacatcgcccgtagcaacagttctgtcctgccggctaacgtcaactac
aagatccgcatggacatcgacaatgtggagcgcaccaacaaaatcaaggacaattactgg
gaccctggtccccgggcggacccctttgaggacttacgctacatctggggtggtttctcc
tacctgcaggacgttatagaacagggtatcatcagggcagtgacgggcagtatggagaag
actggggtctacatccaacagatgccttacccctgctacgtagacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctacgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctactc
atctctgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcttgttcctggcttcctttgccgtggtaaccatcatgcagtgcttc
ctcatcagtaccatcttctctcgtgccaacctggcggcggcctgcggaggaatcatctac
ttcaccctctacctaccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gctaaagtcattgcgagcctgctgtccccggtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggcatccagtggtccaacctgttgtccagcccattg
gaggaggacagctactccctcaccacctccatctgtctcatgctctttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggacagtatgggatccccaga
ccctggtacttccctttcaccaagtcctactggtgtggcgagaaacaagggaagaatata
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatt
gagcctggtgtttacatcaagaacctagtgaaggtgtatagccatggcaacaagctggct
gtagacgggttgaccctgggtttctacgaggggcagatcacctccttcctggggcacaat
ggagccggcaagaccaccactatgtccatcctgacgggtctgttcccacccacctctggc
accgcctacatcctgggaaaggacatccgctcggagctcagcaccatccgacagaacctg
ggagtctgccctcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaaactgtcagtggcgttggcgttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccatacgcacgccggggcatttgggacctgcttttg
aagtatcgtgcaggccgcaccatcatcctctccacccaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgtcggaactcctccagcagctccgtctcctacagcaagaaggag
gacagtgtttctgagagcagctctgatgctggactgggtagtgaacctgagagtgaagcc
accactattgacgtaaccatgatctccaatgtgatcttcaagcacgtccctgctgccagg
ctggttgaggacctgggccatgaactcacctacgttctgccctacaaggcggccaaaggt
ggagccttcgtggaactcttccacgaaatcgacgaccgcctgtctgacctcggcatctcc
agctacggcatctcagacaccaccctggaagagattttcctgaaagtagcagaggacagt
ggagtggacgctgctgaactgcccaactctgatggcaccatcccggctcgtaggcaccgc
agacacgcgttcggagaccaccagagctgtctgaagcccttcaccgaggacgacgctttc
gacttcaacgactcagaaggtgacccagaatctcgtgagacggactggctgggaggctcg
gatggtaaaggctcgtaccaggtcaaaggctggcgtctgataagacagcagtttgtggcg
ttgatatggaaacgcttcctgtatgcccggcgctccaggaaaggcttcttcgctcagatc
gtgcttcctgctgtgtttgtgtgcatcgccctggtcttcagtctcatcgtccctccgttt
ggaaagtaccccagtctggagctggagcctggcatgtatgaagaacagttcaccttcatc
agcaacgacgcccctgaggatgcagacactaacaagctgttgggtgccctgacaaactac
gacggctttggttcacgctgtagctcacctcatgctccttgcaacacgttggatgatgag
tgggccgttcctgagataccggagagtgtgagggacatctttatgaatggcaactggagt
atggaaaacccctctcctctgtgtgagtgcagctgtgaaggacgcaagaagatgttacct
gaatgcccagcgggagctggtggtctgcctcctccacaggtgaaaatcagtgataaaggt
accctgcaaaatctgactggcagaaatatctcagattacctggtcaaaacctatgcgcag
attatcgggaaaagtttgaagaacaagatctcggtcaatgaattcagatatggtggattc
tcattgggcgctaggaacactcagttcctcccaccaggtgatgatattgatcaggccatc
tctgagatcagacgacgcttccacctggaaagagggactgctgctgaccgtttcctcgtc
agcttatccagttttatccagggactggacactaagaacaacgtcaagatctggttcaac
aacaaggggtggcacagcatcgggtccttcctgaacgtgatgaacaatggaatcctgcgt
gccagcctgcccgccggccaggaccccagcaagtatggcatccgtgcctttaaccaccca
ctcaacctcaccaaggagcaactgtcccaggtcgcactgatgaccacctccgtggacgtg
ctggtgtccatctgcgtgatcttcgccatgtccttcgtcccggccagcttcgtagtcttc
ctcattcaggagagagtcaacaaggccaaacacatgcagttcatcagtggagtgcagccc
ttcctctattggctgtccaacttcatctgggatatgtgtaactacatcgtccctgctact
ctggtcatcatcatctttatctgcttccaacaagacgcctacgtctcctccaccaacctg
cctgtactggccctgttgctgctgctctatgggtggtccatcacgcccctgatgtaccct
gcgtccttcttctttaagatccccagcacggcctacgtggtgctcacctccgtcaacatc
ctcatcggcatcaacggcagcgtctccaccttcgtcctcgagctcttcggcagcaacgag
atcggagggatcaacgacatcctgaagaacgtgttcctgatcttccctcacttctgtctg
ggccgaggcctcatcgacatggtgaagaaccaggccatggccgacgctctggagaggttt
ggtgagaaccggttccgttcccctctggcatgggacatggtgggcaagaacctgtttgcc
atggctgtgcagggcgtggtcttcttcacgatcaccgtgctcatccaataccgcttctgt
atcaaggccagatctatgagcaccgaccagaaacctatcggtgaggaggatgaagacgtg
gccagagagaggcaaaggattctgggaggagggggacagtctgacattctagaactcaag
cagctgaccaaggtgtacaatcgaaaacagaaaccagcagtggatcgtctttgtgtggga
attcctccaggagagtgttttggtctgcttggagtcaacggagcaggaaagacgagcacc
ttcaagatgctgactggagactcaatggtcacgagtggagaagcttacctggcgggaaag
agtgtgttgacggagataaacgaggtgcatcagaacatgggctactgccctcagtttgat
gctatcaacgacctgctgactggcagggagcacctggagttctatgccatcctgaggggg
gttcccgagaaggaagtgtgtgaggtggcagagtggggcatccgtaaactaggcctgatc
aagtatgtggacaaggcagcagggagctacagtggagggaacatgaggaaactctccacg
gccatggcactgatcggtggtccaccggtggtcttcctggacgagcccaccactggtatg
gaccccaaggccagacgggctctgtggaactgtattctcagtatcgttaaggaggggcga
tcagtggttctcacctcgcacagtatggaggagtgtgaggccctgtgtacgcggatggcc
atcatggtcaatgggaggttccgctgcctgggtagcgtacagcacttaaagaacagattt
ggggatggctacaccatcatcctccgggtggcaggaccagacccggacctgaggccggtg
atggaattcattgagaaggagcttccaggcagcactctgaaagagaagcacaggaacatg
ctgcagtatcagctgtcctcctccaaaacctccctggcccgcatcttcagcatcctggcc
aagaacaaggagtggctgcacattgaggactactccgtttcccagaccacactagaccaa
gtatttgtcaatttcgccaaggaccaaagtgacgaggaccacttaaaagacatttcaatg
cacaagagagacgcggtggcagtggacattactcagctcaagtctttcctcacagacgag
aaggccagggagagctgtgtgtga
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integrated database retrieval system
