Coregonus clupeaformis (lake whitefish): 121536005
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Entry
121536005 CDS
T08357
Symbol
smad1
Name
(RefSeq) mothers against decapentaplegic homolog 1 isoform X1
KO
K04676
mothers against decapentaplegic homolog 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04081
Hormone signaling
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121536005 (smad1)
09133 Signaling molecules and interaction
04081 Hormone signaling
121536005 (smad1)
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Motif
Pfam:
MH2
MH1
IRF-3
DUF4223
Motif
Other DBs
NCBI-GeneID:
121536005
NCBI-ProteinID:
XP_041699211
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Position
22:complement(1080190..1101044)
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AA seq
481 aa
AA seq
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MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELERALSCPGQ
PSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKALECCEYPFGAKQKDV
CINPYHYKRVDSPVLPPVLVPRNSEFNAKHSMLPRFRNPLHQNEPHMPQNATFPESFSQA
NTQMNFPQTQAHSPGGNSYPSSPGSGSSATFPHSPTSSDPGSPFQMPGETPGQMPETPPP
AYMPPEERMTQDCPQPMDTNMMVPALPLEISNRPDVQPVAYEEPKHWCSIVYYELNNRVG
EAFQANSTSVLVDGFTDPSNNRNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVY
AECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAELLAQSVNHGFEAVY
ELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSV
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcacgtctctgttctccttcaccagcccggccgtcaagcgcctcctcggctgg
aaacagggagacgaagaggaaaaatgggcggagaaagccgtagacgcgttggtgaagaaa
ctgaagaagaagaagggagcgatggaggagttggagagggctctgagctgcccgggtcag
cccagtaactgtgtcaccatccctcgttccctggacgggagacttcaggtgtcccacagg
aagggcttaccccatgtgatctactgcagggtgtggaggtggcccgacctgcagtctcat
catgagctcaaggctctggagtgctgtgagtacccgtttggcgccaagcagaaggacgtc
tgtatcaacccgtaccattacaagagagtggacagtccagtgctgcccccggtgttggtc
ccgcggaatagcgagttcaatgccaaacacagcatgctaccacgcttccgcaaccctctg
caccagaacgagccccacatgccccagaacgccaccttcccagagtccttctcccaggcc
aacacccagatgaacttcccccagacacaggcacactcccctggggggaacagctacccc
agctcccctggtagtggcagcagtgccaccttcccccactcccccaccagctctgaccca
ggcagcccattccagatgccaggtgagacgccaggtcagatgccagagaccccccctcca
gcctacatgcccccagaggagcggatgactcaggactgcccccagcccatggacaccaac
atgatggtccctgcgttgcccctggagatcagcaacaggccagatgttcagccggtggcc
tacgaggaacctaaacactggtgctccatagtgtactacgagttgaacaaccgggtggga
gaggcgttccaggccaactctaccagcgtcctggtcgacggcttcaccgacccgtccaac
aaccgcaaccgcttctgcctgggcctcctctccaacgtcaaccgcaactcaaccatagag
aacacccggcgacacattggcaaaggagtccacctgtactatgtgggtggtgaagtgtac
gctgaatgtctgagtgacagtagcatcttcgtccagagtcgtaactgtaactaccaccac
ggcttccaccccaccaccgtctgtaagatccccagcggctgcagcctcaagatcttcaac
aaccaggagtttgctgagctgctggcacagtccgtcaaccacgggtttgaggctgtctac
gagctgaccaagatgtgcaccatccgcatgagcttcgtcaagggctggggtgcagagtac
caccgtcaggacgtgaccagcaccccctgctggattgagatccacctgcacggccctctg
cagtggctggacaaagtgctcactcagatgggctccccccacaaccccatctcctccgtg
tcctag
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