Coregonus clupeaformis (lake whitefish): 121536387
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Entry
121536387 CDS
T08357
Name
(RefSeq) interphotoreceptor matrix proteoglycan 2-like
KO
K19017
interphotoreceptor matrix proteoglycan 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121536387
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
121536387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEA
EGF
DUF4214
Motif
Other DBs
NCBI-GeneID:
121536387
NCBI-ProteinID:
XP_045062403
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All DBs
Position
23:43290946..43350006
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AA seq
1454 aa
AA seq
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MSDSSLKCLLCTVAFILAFELLGIRTDAASGEGPILADGHDLYYKTFRILPILSAPQSIV
NSPVIKISHKDHDAIPRKKRNVLFPSGVKLCAEESVQQSIANHLSYFHLRVCQETVWEAF
KIFWDRLPNQEEYQTWMSQCLNGTATALAMGNNFSQSKEHLALIESRMLLTGLNSEPTNS
WLHMCSTPTPATEQEALGEVISEFTIEGTEVELPTEPTNDIEVLALPTRAQLEQVVELSI
LLKGERYSDALRDPASLQYQTLNQQFTDKIEDALEGLPGLKSVAVLEFRLDGVVVVYAVT
VEVEGEWVSSEQLDYLTLQSNLVENSYREVEERPTVVYTITDFRNYITEALQNDNIISDT
TLAQVESVSIVPESFEPTAGITKDDSVEILAAEMTLDAPEVKAEDVATGENDVIILEESV
TLPPEPEVTIDDTGMEEEGLLLGNTVATESPPLEHLPADPTSPEQPEGTTLPEPPLEIEA
SGSGVDGLEVLSFQPEEEEAVEEEPAPAADEELTVDEEVILEEVIIEEEILTEEAEAEVP
EEEEAVEVPEEEEAVEIPEEEEAAEVPEEEEAVVVPEEEEVEEEAEAEVPEKEKVEEEAE
AEVPEKEKVEEEAVEVPEDEEVEEIPEEEEAAEVPEEEEAVVVPEEEEVEEEAEAEVPEK
EKVEEEAVEVPEEEEAAEVPEEEEAVEVPEEEEVEEEAEAEVPEKEKVEEEAVEVPEEEE
AAEVPEEEEAVEVPEEEEVEEETEAEVPEKEKVEEEAVEVPEEEEVEEEAVEVPDTAEVL
EEEAEPSENLEYSIIETETIEELEEEAPAFVPVETTEAPEPVENLNVPENPPAIETVPPD
EPEEEANEVFAYPEITEYGEEVKSVEEGPIIEQPVTGEDALEVAEEEVVMEPPDITEISE
EDLVEDEMLLVDEAVPEAAHPTPLSAEKELPFTRVSDAIVVEEATEATALDTAPEPEAKS
GNQGVTPALRPAKYYPGPDISITLELQTIDPVTDYDQTEEGSSGHPSGGVHGMDHSVAMP
INPGRALMVFFSLRVTNMKFSDDLFNKSSPEYKALEQRFIELLVPYLQSNLSNFQNLEIL
NFRKGSIVVNSRMKFGKPVPRGVNTAVYLILEDFANTAYQTMNLAIDKYSLDVESGDQAN
QCKFQACNEFAQCSVNRWSGEAECVCNAGYFSVDGLPCQSICDLQTDFCLNDGKCDIIPG
QGAICRCRVGENWWYRGEHCEEYVSEPLVVGIAIASVAGFLLVASGVIFFLARTLRDQYD
KDETEDPIRRGESIPSLERATKYNPMYESEATMGYSHYYRRYPEAPVYSSTSAEASTDFS
SEEIRHIYENSELTKEEIQDRIRIIELYAKDRQFADFVRQHQTALDTRSESALDTCREIA
LDTCREIALDTCREIALDTCREIALDTCREIALDTCREIALDTCRESTLDTRREIALDTC
RESTLDTCRESVST
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcttcattgaaatgccttttgtgtacagttgcattcattttagcatttgaa
ctcttgggaataagaacagatgctgcatctggggaaggacctattcttgctgatggacat
gatctatattacaaaacatttagaatattacctattctatcagctcctcaaagcatagtt
aattcacctgtcatcaagatctcacacaaggaccatgacgctatcccccggaagaagcgc
aacgtgcttttccccagcggggtcaaactctgtgctgaggagagtgtgcaacaatccatt
gcaaatcacctcagctactttcacctgcgagtgtgtcaggagacggtgtgggaggccttc
aagatcttctgggaccgcctcccgaaccaggaagagtaccagacctggatgagccaatgc
ctgaatggcacagccaccgctctggcgatgggcaacaacttcagccaatcaaaggagcac
ctggccctgattgagagtagaatgttgctgacagggttaaacagtgagcccaccaactca
tggctgcatatgtgcagcaccccgactccagcaacagaacaggaggctctaggagaggtc
atcagtgagttcaccatagaagggacagaggtggagcttcctacagaacccaccaatgac
atagaggtgttggctctgcccacgcgggcccagctggagcaggtggtggagctgagtatc
ctgctgaagggagagaggtacagcgatgctctcagagaccctgccagcctccagtaccag
acactcaaccagcagttcactgacaagatagaagatgctttggagggactgccaggcttg
aagagtgtggctgtgctggagttcaggttggatggtgtggtggtggtctatgcagtgacg
gtggaggtggaaggggagtgggtgagcagtgagcaattggactacctgaccctgcagtcc
aacctggtggagaactcctacagagaggtggaggagaggcccacagtggtctacactatc
actgacttcaggaactacatcactgaggccctgcaaaatgacaacatcatcagtgacaca
accctggcccaagtagagagtgtgtccattgttcctgagtccttcgagcccacggctgga
attaccaaggatgacagcgtggaaatattggctgctgagatgaccctagatgcccctgag
gttaaagctgaggatgtggcgacgggagagaatgatgttatcattctggaggagagtgtg
accctcccccctgagcctgaggtgaccatcgatgacacgggcatggaggaggagggtctg
ctgttggggaacactgtggctacagagagccctcccctggagcacctccctgcagaccct
acctcccccgagcagccagagggcactacgctccccgagccacctctggagatagaggcc
tctgggtcaggtgttgacggactcgaggtcctgtccttccagcccgaggaagaggaggct
gtagaagaagagccagctccagctgcagatgaggaacttaccgtagatgaagaggtaatt
ctggaagaggtgattatagaggaagagatcctaacagaggaagcagaagcggaggtccct
gaggaagaggaagcagtggaggtccctgaggaagaggaagcagtggagatccctgaggaa
gaggaagcagcggaggtccctgaggaagaggaagcagtggtggtccctgaggaagaggag
gtagaggaggaagcagaagcggaggtccctgagaaagagaaggtagaggaggaagcagaa
gcggaggtccctgagaaagagaaggtagaggaggaagcagtggaggtccctgaggatgag
gaggtagaggagatccctgaggaagaggaagcagcggaggtccctgaggaagaggaagca
gtggtggtccctgaggaagaggaggtagaggaggaagcagaagcggaggtccctgagaaa
gagaaggtagaggaggaagcagtggaggtccctgaggaagaggaagcagcggaggtccct
gaggaagaggaagcagtggaggtccctgaggaagaggaggtagaggaggaagcagaagcg
gaggtccctgagaaagagaaggtagaggaggaagcagtggaggtccctgaggaagaggaa
gcagcggaggtccctgaggaagaggaagcagtggaggtccctgaggaagaggaggtagag
gaggaaacagaagcggaggtccctgagaaagagaaggtagaggaggaagcagtggaggtc
cctgaggaagaggaggtagaggaggaagcagtggaggtccctgatacagcagaggttcta
gaagaagaagctgaaccctcagaaaaccttgagtactccatcatagagacagagaccata
gaagagttggaggaagaggcccctgccttcgtccctgtggaaacaacggaagctcccgag
ccagtggagaaccttaatgtccccgagaatccccctgccatcgagactgtacccccagat
gagcctgaagaagaagctaacgaggtgtttgcttatccagaaataacagaatatggagag
gaagttaagagcgtagaggagggaccaatcatcgagcagccagtaactggagaggatgcc
ttggaggtggcagaagaagaagtggtgatggaacctccggacattactgagatctcggag
gaggatctggtagaagatgagatgttattggttgacgaggctgttccagaggccgctcat
cccacccctctctctgcagagaaggagttgcccttcacccgagtctctgatgccatagta
gtggaggaggctacagaggccacggccctggacacagccccagaaccagaggcaaaatca
gggaaccagggggtcaccccagctctcagacccgcaaagtactaccctggcccagacatt
tccatcactctggagctgcagacgatagaccctgtgacagactatgaccaaacagaggag
gggagcagcgggcacccctctggaggggtacatggtatggaccacagcgttgccatgcca
atcaaccctgggcgggcgctgatggtgttcttcagtctgcgggtcaccaacatgaagttc
tcagatgacctcttcaataagagctccccggaatacaaggccctggaacaaaggttcata
gagctgctggtcccctacctccagtccaaccttagtaacttccagaacctggagatcctg
aacttccggaaagggagtatcgtggtcaacagccgaatgaagttcgggaagccggtgcct
cgcggcgtcaacactgcagtctacctgatcctggaagacttcgctaacacagcctaccag
accatgaacctggccatcgacaagtactcactggacgtagagtcaggtgaccaggcgaac
cagtgtaagttccaggcatgtaacgagtttgcccagtgttctgtgaaccgctggtctggc
gaggcggaatgtgtgtgtaatgctggatacttcagcgtggacggactgccctgtcagagc
atctgtgacctgcagacagacttctgtttgaacgacgggaagtgtgacatcatacctgga
caaggggccatctgcagatgtcgtgtaggggagaactggtggtaccgtggagaacactgt
gaggagtacgtgtcagaaccgctggtggtcggaatagcgattgcctccgtagcaggtttc
ctattggtggcttccggtgtgatcttcttcctggcaaggacactacgggatcagtatgat
aaggatgagacagaggaccccatacggcgaggggagagtatcccgtctctagagagggcc
actaagtacaaccccatgtatgagagtgaggctacgatgggctacagccactactaccgc
cgctacccagaggccccggtctacagcagcaccagtgcagaggcctccacagacttcagc
agcgaggagatacgccacatctacgagaacagcgaactgaccaaggaggaaatccaggac
aggatacgcatcatagagctctacgcgaaggaccggcagtttgcagactttgtgcgtcag
catcaaactgccctggatacacgcagcgagagcgcccttgatacatgcagagagatcgcc
cttgatacatgcagagagatcgcccttgatacatgcagagagatcgcccttgatacatgc
agagagatcgcccttgatacatgcagagagatcgcccttgatacatgcagagagatcgcc
cttgatacatgcagagagagcacccttgatacacgcagagagatcgcccttgatacatgc
agagagagcacccttgatacatgcagagagagcgtgtccacatag
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