Coregonus clupeaformis (lake whitefish): 121536459
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Entry
121536459 CDS
T08357
Name
(RefSeq) protocadherin-8-like isoform X1
KO
K16499
protocadherin delta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121536459
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121536459
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
121536459
NCBI-ProteinID:
XP_041699678
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All DBs
Position
23:55946..60866
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AA seq
969 aa
AA seq
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MGFCRIRGVGECVVLAVLFYSVQSTTTRYYTYEEDAPGTEIGNLSQDLKIDPAEDTQTSF
RFMQETNSCVIQMRETDGLLTVGETIDREQLCPRSPRCFVTFDIVAFSKEKFQLIHVEIE
VRDINDNSPQFLHNETTLEISENVQVDSRFPLDIAVDHDVGNNYIQSYHISPSSHFIVDV
RSREDGVKYAELVLVKAMDREAEDSYTIEVTATDGGEPPRSGSMTVHIKVLDFNDNSPTF
EHNSLKVELYEDSPVGYQVLKVHAFDPDAGINGEVVYGFVEDTSSEAMRIFNIDRISGAV
TLNTLVDYEKKRSHELNIKASDLGTNSIPSTCKVVVDVVDVNDNAPEITIKPKTSTSDDV
AYITEAAAEESFVALISTSDSDSGSNGYVRSSLHGHDHFKLQQAYGDTFMIVTTTTLDRE
KIPEYNLTVMAEDLGTPPFKTVKQYTIRVTDENDNAPLFSKSIYEVSVLENNIPGSYITT
VVARDLDRGKNAKVSYKLIDSEVVGDASISTYVSLDPVSGSLYSLRSFDFETLQQIELTI
QAEDKGSPQLSSTSVIRIKVVDQNDNYPYFTFPVMLNDSVEIPLPVNAPVGYLALRVKGQ
DEDEGMNGELSYRIVQGDSKIFSINKDTGEIAVKQGLASAIGDVLEIKIALSDNGRSPLS
SRATIRFVVTDLQLSDDQLVIVLQSSDEESTGLDVSVVVIIILGGGCTLLLIAIAIVVIT
CKLNRGGKDHDSKRDVTHSLFGSRRHPRLNSAEPNIYGGPRGFLSERTPSSLDESSLYEE
KSGGLESQMFLPPKPFQPSSVWQGDKYCPQMSSGIDQQSVKDSGKGDSDFNDSDSDISGD
GGKRNLRTFQPWAKSSFHAANTLAVDCQGTYCVIPTQSFQAPRDNAYTIGFTQAPVYNNP
HAYRHSWKDSSYNTSVPKARNTMQTFCHPTSTLLSYFTKTQSPGGLDEIQEHKQDITTVA
TISEVATIF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgggattctgcaggattcgaggagttggtgagtgcgtggtgcttgctgttctgttttac
tcggttcagtctacgaccacgaggtactacacgtatgaagaggatgcgcccgggacagag
attggaaatctgtctcaggatttaaagatagacccagctgaggacactcaaacatctttc
cgattcatgcaggagaccaattcgtgtgtgattcaaatgagggagactgatggactttta
actgttggggaaacgattgaccgggagcagctgtgcccgaggtccccgcggtgttttgtc
accttcgacatagttgccttctccaaagaaaagtttcagctgattcacgtagagatcgag
gtaagggacattaacgacaattcacctcagtttctccacaacgagacgacccttgagata
tccgagaatgttcaggtggactcccgattcccgttggacatcgctgttgaccatgatgtc
ggcaataactacatccaaagttaccatatctctccctccagccatttcatagtggatgtg
cgcagcagggaggatggagtgaagtatgctgaacttgtgcttgtgaaagcaatggacaga
gaggctgaagattcctatacaattgaagtgacggcaacagatggtggagagccccccagg
tccggatcaatgactgttcatatcaaagtgctggattttaatgacaacagcccaacgttt
gagcacaactcacttaaagttgaactttacgaggattctcctgtaggttaccaagtgctt
aaagtgcatgcgtttgacccagatgctggcatcaatggcgaggtagtgtatggatttgta
gaagacacatcatctgaagcaatgcgtatttttaatatagaccgaatttccggtgctgta
actttaaacacattggttgattacgagaagaagagatcccatgaactgaacattaaagca
tccgatttaggcactaattctattccatcgacttgcaaagtggttgttgatgtggtagat
gtaaatgataatgcaccagaaatcaccatcaagccaaaaacctcgacgagtgacgatgta
gcttacatcacggaggccgcagcggaggaaagctttgtggcgctgatcagcacctcggac
agcgactctggctcgaacggttatgtgcgcagcagcctacacggtcacgaccatttcaag
ttgcaacaggcctacggggacactttcatgattgtaacaaccaccactttagatagagaa
aagatcccggagtataacctcactgtaatggctgaagaccttggaactcctcctttcaaa
accgtcaagcagtataccatcagagtgaccgacgagaacgacaacgcccctctcttcagc
aaatccatttatgaagtttcagtcctggaaaataatatccccgggtcctatattactact
gttgtagcacgtgaccttgatcgcggtaaaaacgccaaagtgtcctataagctcatagac
tcagaggttgtcggggatgcttccatttcgacttatgtgtctttagacccagtgtcaggg
tcattgtatagcctaagatctttcgattttgaaacgctccagcagattgagttaaccatc
caggctgaggacaagggctcacctcagctgtcaagcacatccgtgatcagaatcaaagtg
gtggatcaaaacgacaactatccctattttaccttccccgttatgctgaatgactctgtt
gaaattccccttcctgtcaatgcaccagtggggtacctggccctacgggtcaaaggtcag
gatgaggatgagggtatgaatggtgagctcagctacagaatcgtacaaggtgactctaag
atattttcaatcaataaagacactggagaaatagctgtaaaacagggtctggcctctgct
attggagacgtgttggaaatcaagattgcattgagtgacaatgggagatcccctctctcc
agccgtgccaccattcgctttgttgtcacagacttacagctctcagacgaccaacttgtc
attgtattacagtcgagtgatgaggaaagcacaggcttggacgtttcagtagtagtaatc
attatactaggcgggggttgtactctgctgctgattgccatagcgattgttgtcatcaca
tgcaagctgaaccgaggagggaaggatcatgactccaagagagacgtgactcacagcctg
tttggctccaggcgtcatcccaggctcaactctgcagaacccaacatatatggtggtcca
agaggtttcctcagcgaaaggaccccttcatctcttgatgagtccagcctatatgaagag
aaaagtggcgggttggagtcccagatgttcctgcctcccaagcctttccaaccatcatct
gtgtggcaaggggacaaatactgcccgcaaatgagcagtggcattgaccagcagagcgtg
aaggacagtggaaaaggagacagtgacttcaatgacagtgactctgacatcagtggggat
ggaggcaagaggaacctccgcaccttccagccctgggccaaaagctcattccacgccgct
aacaccctcgctgttgattgccaaggcacttactgtgtaataccaacccaaagcttccag
gctcccagagacaatgcatacacaataggttttacccaagcgccggtctacaacaatcca
catgcctatcgccactcctggaaagactccagctacaacacaagtgttcccaaagcaaga
aacaccatgcagacattctgtcatcccacaagcaccctcctgtcttacttcacaaagaca
caatctcctggtggacttgatgaaattcaggagcacaaacaagatattactacagtggca
accatatctgaagttgctaccattttttaa
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