Coregonus clupeaformis (lake whitefish): 121536460
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Entry
121536460 CDS
T08357
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121536460
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121536460
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121536460
NCBI-ProteinID:
XP_041699680
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Position
23:47007357..47011377
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AA seq
980 aa
AA seq
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MMRGILTGWHRSIFGFIILQMLFVSLAESEGNTLKYQTNEERSPGTVIGNLAMDMSLSRS
FSSKTNFRMMKQFNNYFIRVRESDGELTVGERIDRERICRHTLQCLITFDVVSFSKERYK
LIHVEVEVKDINDNYPEFPNKECTVEISENADVGFRIPLDPAEDADVGSNYIQSYQISVN
GHFSIDVLLRADGVKYAELVLMKELDRETQSSYVVELIATDGGNPFRSGSTKITIQVTDF
NDNRPVFDQNNFSVTLPEDAPVGFVLLDLNAVDPDEGLNGEVVYGFGKQVSAEIRELFEV
YSKSGRITLKNPVDFETKKTYELDVQATDLGANPIPAICKIIINVKDVNDNAPEISITPM
TSISTGIACISETAEKDSLVALISTSDGDSGVNSQVHCTLYGNDHFKLKQAYEDSYMIVT
AAALDREKISEYNLTVMAEDFGSPPLRKITEYTIRLSDENDNAPHFTKPVYEVSVVENNA
PGAYITTVEARDADLGTNGKITYRLLDSVIMGSPVNTFVSLNAISGSIYALRSFNYEVMK
HLEVHVQASDGGLPQLQSSAIINLKIMDQNDNSPSIVEPVLNKGSAKVFLPKHAPAGYVV
TRLKATDADEGINAQLSYSITGGGHLGFSINKVTGELHVSCELNYDLSETLRVVVAVNDN
GTPSLTSTATIHLALIEGTPPSVPAMVQSDSEEVFEWDMSIAIIIVLAGSCSLLLLGIIL
ITTTCSRRKREKREAAGCEKVDMPHVEKGDSSHIDSLITNHKSNAFDVHPFPEKALLASS
NIIKTVPGDGRQEQECDFDNRIMEGKLEGYSTLPGYRKGTLRPITIWKGNSFTTISARDP
QFSGKDSGKGDSDFNDSDSDISGDGHKNNSPPINSLWACTSECKILGHSDRCWSPSASRA
NTSLSHGPHLSTFSKTASLPRNTLQRDTYYQQAHLPKTNGLQSVYEKVQHQEFDYILVCP
PTPARILETGEISLPEYGHS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtggcattttaacaggttggcatcggtcgatttttggattcataatactacaa
atgttatttgtctccctggctgagtctgagggaaatactctgaaataccagaccaacgag
gagcgaagtccaggaacagtgatcggaaacctggccatggacatgtccttgagtcgctct
tttagctccaagactaattttagaatgatgaaacaattcaacaattattttatcagggtg
agagaaagcgacggggagcttactgtcggggaaaggattgacagagagagaatctgcagg
cacactttacagtgtctcatcacttttgatgttgtcagtttttcaaaagagaggtacaaa
ttgattcatgtcgaggtcgaggtaaaagacatcaatgataactatccagagtttccgaac
aaggaatgtacagtggagatctctgaaaatgctgatgtagggttccgcattcctttggac
ccagcggaggacgcagacgtcggatcaaactacatccaaagctatcaaatttctgtcaac
ggtcatttttccattgatgtgcttttgagagcggatggggttaagtatgcggagttggtg
ctaatgaaagagttagacagggagactcagtcatcttatgtggtggagcttattgccacc
gacggaggaaacccatttaggtcgggttcaacaaaaataacaatacaagtgacggacttt
aatgacaaccgtcctgtttttgaccagaataatttctcggtcactttgcccgaggacgca
ccggttggattcgttttattggacttaaatgcagttgatccagatgaaggtttaaacgga
gaggtggtctatggattcggaaaacaggtttctgcagagatccgagaacttttcgaagtg
tacagtaaatccgggcgcataacgctcaagaacccagtggattttgagaccaagaaaaca
tatgagttagacgtgcaggcgactgatctaggagccaacccgatccccgccatctgtaaa
ataataattaatgtcaaagacgttaatgacaatgccccggaaatcagtattacgccaatg
acctccatctcaacaggcatcgcgtgtattagcgagacagcagaaaaggacagcctagtg
gctctgatcagcacctcggacggggactcgggcgtcaacagccaggtccattgcacctta
tatgggaacgaccatttcaaacttaaacaggcttatgaggacagctacatgattgtcacc
gcagcagccctggacagggagaagataagcgagtacaatttaactgtgatggctgaagat
ttcgggtcacctccattgagaaaaatcacagaatacaccatcaggctaagcgacgagaat
gacaacgccccacactttactaaacctgtctatgaagtttctgtcgtagaaaataatgca
ccaggggcatatattaccacggttgaggccagagatgcagacttggggactaatggcaaa
attacatacagacttttagacagtgttataatgggatcacctgtcaacacgtttgtatct
ctaaatgcaatctctggttcaatatatgcactaagaagcttcaactatgaagtcatgaaa
catctggaggtacacgtccaggcaagtgatgggggcttgccccagcttcagagcagtgcc
atcatcaatctaaaaataatggatcagaatgacaactctccctccatcgtggaacctgtc
cttaataagggatccgccaaggttttcctgcccaaacatgcacctgcaggttatgttgta
acccggttaaaggccacggacgctgacgaaggcataaacgcacagctgtcttacagcatc
actggtgggggacacttgggtttctccatcaacaaggttactggggagttacatgtgagt
tgtgagctgaactacgacctgtctgaaacactgagagtcgtagtggctgtcaatgacaat
gggacgccttctctgacctccacggccactatacacctcgctctcatcgaaggcacccct
cccagtgttcctgctatggtgcaaagcgacagcgaggaggtctttgaatgggacatgtcc
atagccattatcattgtcctagcagggagctgctccctcctcttgctaggcatcatcctg
atcactaccacctgcagtcgacgcaaacgggaaaagagagaggcggcgggatgtgaaaaa
gtagacatgccacatgtggagaagggggatagcagccatattgattcattgatcaccaac
cacaaaagcaatgcgtttgatgtgcacccttttcctgagaaagcactgttggcctccagc
aacattataaaaacagtccctggtgatggcagacaagaacaagagtgtgactttgacaac
agaataatggagggtaaattagagggttattcaacactgcccggctatcggaaaggaacc
ctccgacccataaccatatggaagggcaactcattcacaaccatctcagccagagatcct
cagttcagtgggaaggacagtgggaaaggagacagtgactttaacgacagcgactctgac
atcagtggagatggacacaaaaacaactccccaccgataaacagtctctgggcctgcacc
agtgagtgtaagatcctgggccactccgaccgatgctggagcccctcagcctccagagcc
aacaccagcctgtcccacggaccacacctctcaaccttctccaagacagcctcgctgcca
cggaacactctgcaaagagacacatactaccaacaggctcacctacccaagaccaacggt
ctgcaaagcgtctatgaaaaagtccagcaccaagaatttgattatattctggtttgtcca
ccaacaccagccaggatactagagactggtgagatatccctcccggagtatggacactct
taa
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