Coregonus clupeaformis (lake whitefish): 121536534
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Entry
121536534 CDS
T08357
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121536534
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121536534
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121536534
NCBI-ProteinID:
XP_041699825
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All DBs
Position
23:complement(45192608..45204880)
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AA seq
297 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNSGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGMGSSGVGQRLESPGCHGGSASSGYTHMNGWANGAYSGQV
AAAAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHPHNPQPMHRYDMSALQYSPISNSQGYM
SASPSGYGGITYTQHQSSGVSSSAAMSTLGSLVKSEPSGVQYEDCHEGLPMDHRGDL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagactgacctccattcccctggaccccaaacgaacacaaat
tcgggccaaacgggaccgaacagtggatccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcccaggagaacccc
aaaatgcacaactccgagatcagcaagcggctgggcgccgagtggaaggtgatgactgaa
gcggagaagagacccttcatcgacgaggcgaagcggttacgagccatgcacatgaaggag
cacccggattataaatacagaccaagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggctggtggcctgctctctggggctggcggtggtggaatgggtctgggggtc
gggatgggttcatccggggtcggccagaggttagagagccccgggtgccacgggggctcc
gccagctcaggctacacgcacatgaacggctgggcgaacggtgcgtactccgggcaagtg
gctgcagccgctgcggccgcggcgatgatgcaggaggcgcagctagcttacagccagcac
ccgggcagcgggcaccaccatcactcacaccaccaccacccgcacaacccccagcccatg
caccgctacgacatgtcggcgctccaatacagccccatctcgaactctcagggctacatg
agcgcctctccgtccggctacggcgggatcacctatacgcagcaccagagctctggcgtc
tcctcctcggctgccatgagcacgttagggtcgctggtgaagtcagagccgagcggtgtc
cagtatgaggactgtcatgagggactgcccatggatcaccgtggagacctgtga
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