Coregonus clupeaformis (lake whitefish): 121536578
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Entry
121536578 CDS
T08357
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121536578
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121536578
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121536578
Peptidases and inhibitors [BR:
cclu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121536578
Ubiquitin system [BR:
cclu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121536578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
RasGEF_N
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
121536578
NCBI-ProteinID:
XP_045067571
LinkDB
All DBs
Position
37:complement(34095161..34173499)
Genome browser
AA seq
2670 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQGQGQGQGQAPDAQGQSPSQSQPPLPQNQTSSPNSSNENSPV
SPPDEQGQGDAPPQLEEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIEL
SKKELDVKCEACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLS
QDWFPLLELLAMAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKVGSEFK
GWLVDLINKFGTLNGFQTLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPV
IEMVPQFLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKM
ILRLLQISSFNGKMNALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSI
VLRDSLHQPQYVEKLEKILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAW
DFSPEQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSD
DVPVDIMDQALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICS
LFGEAPQNLRKKMPINIQTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYME
TMRQFSKAEQTEFDPQTVRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCL
AENAVFLCDREACFKWYSKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFF
KAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKL
QVNQVEIHEDFIQSCFDRLKASYDTLCVLEGDKDSINSARQEAVRMVRVLTVLKEYINEC
DSDYHEERTILPMSRAFRGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIK
ANATHTKIELFIGGEVIDPADDRKLIGQLNLKDKALITAKLTQVSANMPSSPDSSSDSST
GSPGNHGNHFSEGPNPEVESCLPGVIMSLHLRYISFLWQVADQGCSLNMHLLRDGARVLM
KLMPPDNSTVESLRGVCLDHAKLGENGLSPTLDSRFFGPSPSQVLYLIEVVYVLLMPASS
TLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLPSADMETRRGAYLDALKIGKLLLTAVGF
GHVKAVAEACQPNAEGTTPISPINQATHDQALVLQSALQNIPNPASECMLRNVAIRLAQQ
ISDENFFQASKYIPDICVIRAVQKIVWASGCGTIQLVFSSNDEISKIYEKTNMGKEPDGE
DEQVCCEALEVMTLCFALLPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMA
TRCCMGHRPLLFFITLLFTVLGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLL
NNEIDWLKRIRDEVKRTGETGVEETILEGHIGVTKELLAFQTPEKKYYIGCEKGGANLIK
ELIDDFIFPASNVYLQYMKSGEFPTEQAIPVCSSPASINAGFELLVALAVSCVRNLKQIV
DMLTDMYYLGCEALTEWEYLPPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGV
LAVEGTGTDVDDDMSGDEKQENEVTQERESNADPRDEVFSYNQQIDDKPSLSKSEDRKEY
NIGVLRHLQVIFGHLASSRLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDE
ALKALGHPATLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVK
GDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFP
RELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPSDPEPPGSSKYRLVGVLVHSGQASGGH
YYSYITQRNVGGADGERNRWYKFDDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRM
SYRRQKRWWNAYILFYERMDSLDKDSELIKYIQELTISSSSNNKPSHQVKMPNVIECSVR
KQNVQFMHNRMQYSLEYFQFVKKLLTCNSVYLNPPLGQDHLLPEAEEIAMISVQLAARFL
FSTGFHTKKVVRGPASDWYDALCVLLRHSKNVRYWFAHNILFAYANRFSEYLLECPSAEV
RGAFAKLIVFIAHFSLQDGPCPSPTASSAGASTQPQACDNLSLSDHLLRAVLNLLRREVS
EHGRHLQQYFNLFVMYANLGLAEKTQLLKLSVPATFMLVALDEGPGPPIKYQYAELGKLY
TVVSQLVRCCDVAARMQSSINGNPPLPNPYGDANQTTPVMPVQQLVGEILFVRTSYVKKI
IEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDS
WQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCSVAYQILQSNG
DLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAK
ACELCPEECHLTKPGEAESEDDAAMRKSSSPQQLLPGEGTGPQQHTEPDDQEASEDQDTS
PPEDTSLYPHSSPGTTTQFQQNNHPHGQPYTGPAAQLMNNPHHLGPAPSSTPGPDPSTGT
GPGPRAQENWESTEEVPPASTTQAPTSPKE
NT seq
8013 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccagggc
cagggccagggccagggccaggcgcccgacgcccagggtcagagtccgagccagagccag
cccccgctgccacagaaccagacgtcatcccctaactcgtccaatgagaactctccagtg
agccccccggatgagcagggtcagggggatgcccccccccagctggaggaggaggaggag
cctgccttccctcacacagacctggccaagctggacgacatgatcaacagaccccgctgg
gtggttccagttctgccaaagggagagttagaggttcttctagaagctgctatagagctt
agtaaaaaggaacttgatgtgaagtgtgaggcgtgccagaggtttttcagagacggcctg
accatctctttcaccaagatcctcacagacgaggccgtcagtgggtggaagtttgagata
cataggtgtatcatcaacaacacccaccggctggtggagctgtgtgtggccaagctctct
caggactggttccccttgctggagctgctggccatggccttcaacccccactgcaagttc
cacatctacaatggcacgcggccctctgagacagtgcccgcaggggcgcagctagcagac
gacgagctcttcgcccgcccccctgaccctcgctctccaaaggtagggtctgaattcaag
ggctggttggtggatttaattaacaaatttggcacgttaaacgggtttcaaacgctgcac
gatcgcttcataagtggccaagcactgaacgtccagatcatcgctgcccttatcaagcct
ttcgggcagtgttacgagttcctcacgttgcacacggtgaagaagtacttcctgcccgtc
atcgagatggttcctcagttcctggagaacctgacggacgaggaactgaagaaggaagcc
aagaacgaagccaaaaacgatgccctgtccatgatcatcaagtccctgaagaacctggct
tccaaggtgcctgggcaggaggagactgtcaagaacttagaaatatttaggttaaaaatg
attcttaggttattgcaaatttcctcttttaacggcaaaatgaatgcactaaacgaagta
aacaaggtaatctccagtgtgtcctattacacacatcggcatggcaaccccgaggaggag
gagtggctaactgcagaacgcatggcggagtggatccagcagaaccacatcctgtccatt
gtgctgagggacagcctccaccagcctcagtacgtagagaaactagagaagatactccgc
ttcgtcatcaaggagaaagctcttaccatgcaggatctggacaacatctgggctgcacag
gctggtaaacatgaggccatcgtgaagaacgtccacgaccttctggccaagctggcctgg
gacttctctcctgagcagcttgaccacctctttgactgcttcaaggcgagttggacgaac
gccagtaagaagcagcgtgagaagctgttggagctgatccgtcgtctggcggaggacgac
aaggatggagtgatggcccacaaggtgctgaacctgttgtggaacctggctcacagcgac
gacgtgcctgtagacatcatggaccaggccctcagtgctcacatcaagatactggactac
agttgctctcaggatagagacacgcagaagatccagtggatcgatcgcttcatagaagag
ttgcgcaccaatgacaaatgggtgattcctgcactaaagcagatccgagagatctgtagc
ctgttcggagaggctcctcagaatctcagaaagaaaatgcctattaacatacaaacgaac
ttagtgggtcagacccagaggagtcctcatgtgttctatcgtcatgacctgatcaaccag
ctgcaacacaaccatgccctggtcacgctggtggctgagaacctctctgcctacatggag
accatgaggcagttctctaaagccgagcagacggagtttgacccccagacggtgagggta
gggagccgctacagccacgtacaggaagtccaggagagactcaacttcctgaggttcttg
ctgaaggacggccagttgtggctctgtgctcctcaggcaaaacagatctggaagtgtctg
gccgagaacgcagtctttctttgtgaccgagaggcctgcttcaaatggtactccaagctg
atgggagacgagccagacctggacccggacatcaacaaggacttctttgagaacaacgtt
ctgcagctggatccgtctctgctcacggagaacggcatgaagtgctttgagaggttcttc
aaggccgtcaactgccgggagggcaagctggtggccaaacgcagggcctacatgatggac
gacctggagctcataggactggactacctctggagggtcgtaattcaagggagcgatgac
atcgccagtcgagccatagacctgctgaaagagatttacaccaacctcggaccaaaacta
caagtcaatcaggtagagatccacgaggatttcatccagtcatgtttcgaccgtctgaag
gcgtcgtatgatacgctgtgtgtcctggaaggggacaaggacagcatcaactcggcccgg
caggaggccgtccgcatggtccgtgtgctcaccgtgctcaaggagtacatcaacgagtgt
gacagtgactaccacgaggagaggaccatactgcccatgtccagggcgttccgggggaag
cacatcacgttgattgtgcgtttccctaaccagggccgtcaggtggatgacctggacatc
tggtctcacaccaacgacaccattggctcggtgcgccgcggcatcctcacacgcatcaag
gccaacgccacgcacaccaagatagagctcttcattggcggggaggtcatcgacccggcc
gacgacaggaagctgattggccagctcaacctgaaagacaaagcgttgatcacagccaag
ctgacccaggtgagtgccaacatgccctccagcccagacagctcctcggactcttccact
ggctcacctggtaaccacggcaaccacttcagcgaagggcccaatcccgaggtggagagc
tgtctccctggagtgatcatgtctctccacctgcgctacatctccttcctgtggcaggta
gcagaccagggctgtagcctcaacatgcatctgctgcgagacggagccagagtactcatg
aagctcatgcctccagataacagtaccgtggagagcctgcgtggtgtgtgtctggaccat
gccaagctgggagagaacggcctcagccccacactggactcgcgcttctttggcccctcg
ccatcacaagtcctctacctcatagaggtggtgtatgtgttgctcatgccagccagctcc
acattgggtgaggacgccagcgacttccagtacaacttcctgaagagtggcgggctgccg
ctggtactgagcatgctcacacggaacaacttcctgccgtcggccgacatggagacacgg
cgaggggcgtacctcgacgctcttaagatcggcaaactgctactcaccgctgttgggttc
ggacacgtcaaagccgtggccgaggcctgccagcccaacgctgaggggaccacacccatc
tcaccgatcaaccaggccactcatgaccaagccctggtcctccagagtgccctgcagaac
atccccaaccctgcttctgagtgcatgctccgcaacgtagctatacgcctggcccaacag
atctctgacgagaacttcttccaggcgtcaaagtatatccctgacatctgtgtgatccgg
gcagtgcagaagatagtgtgggcttcaggctgtggcaccatacagctggtcttcagctcc
aacgacgagatcagcaagatctatgagaagacgaacatgggtaaggagccggacggggag
gatgagcaggtgtgctgtgaggccctggaggtcatgaccctgtgtttcgctctgctgccc
accgctctggacacactcagtaaggagaaggcctggcagaccttcatcatagacctgcta
ctgcactgccacagcaagtcagttcgtcagatggcccaggagcagttcttcctcatggcc
accaggtgttgcatgggccaccgacccctcctcttcttcatcaccctcctcttcactgtg
ctggggagcacagctaaggaacgggccaagcatgctggggactacttcaccctgctcagg
cacctcctgaactacgcctacaacagcaacatcaacctgcccaacgcagaggtgcttctc
aacaacgagatcgactggctcaagaggatcagggatgaggtgaagaggacaggggagacg
ggcgttgaggagaccatcctggagggccacatcggagttaccaaggagctgctggccttc
caaacaccagagaagaagtactacatcggctgtgagaagggaggggccaacctcatcaag
gagttgatagacgacttcatcttcccagcgtctaacgtgtacctgcagtacatgaagagt
ggggagttccctacggagcaggccatccctgtctgcagcagccccgcctccatcaacgca
ggcttcgagctgctggtggctctggcagtgagctgtgtccggaacctcaagcagatcgtc
gacatgctcactgacatgtactacctaggttgtgaggctctgacagagtgggagtacctc
cccccagtggggccgcggcccaccaaaggctttgtggggctgaagaacgccggggctacc
tgctacatgaactcggtcatccagcagctctacatgatcccccccatccggaacggcgtc
ctggccgtggagggcaccggcaccgacgtggacgatgacatgtccggcgatgagaagcag
gagaacgaggtaacgcaggagagagagagtaacgcagacccgcgggatgaggtgttcagc
tacaaccagcagattgacgacaagccatcgctcagtaagtcagaggacaggaaggagtac
aacattggggtgctgcgccacctgcaggtcatctttggtcacctggcctcctccagactg
cagtactatgtaccccggggcttctggaaacagttcaggttatggggtgagccggtgaac
ctgcgagagcagcacgacgccctggagttcttcaactccctagtggacagtctggacgag
gctctgaaggccctgggtcacccggccacgcttagcaaggtgctggggggatccttcgcc
gaccagaagatctgccaggggtgcccgcataggtatgagtgtgaggagtcgttcaccact
ctgaatgtagacatcaggaaccaccagaacctgttggactctatggagcagtacgtcaaa
ggagaccttctggagggagccaatgcataccactgtgagaagtgcaacaagaaggtggac
acagtgaaacgtctgctgatcaagaagcttcctccagtgcttgccatccagctgaagagg
tttgactacgactgggaaagggagtgtgccattaagttcaacgactactttgagttcccc
agggagctggacatggagccctacacagtagccggggtggccaagctggagggggacgac
gtcaacccagagaaccaggtgatccagcagaacgagccctctgatccagagcccccgggc
agctccaagtaccgtctggtgggggtgctggtccactcaggccaggccagcggcggacac
tactactcctacatcacgcagaggaacgtgggcggggccgacggcgagcgtaaccgctgg
tacaagtttgacgacggcgacgtgacagagtgcaagatggacgacgaggaggagatgaag
aaccagtgcttcggaggggagtacatgggcgaggtgtttgaccacatgatgaagaggatg
tcgtaccggcgccagaagcgctggtggaacgcttacatcctcttctacgagcgcatggat
tcactggacaaggacagcgagctgatcaagtacatccaggagctgaccatctcgtcctcg
tccaacaacaagccgtcgcaccaggtcaagatgcccaacgtgatcgagtgcagcgtgcgc
aagcagaacgtgcagttcatgcacaaccgtatgcaatacagcctggagtatttccagttt
gttaagaaacttctgacctgtaacagtgtctatttaaaccctccgctaggacaagaccat
ctactgcccgaggcagaggagatagctatgattagtgttcagctggctgctaggttcctc
ttcagcactgggttccacaccaagaaagtagtgagggggcccgccagtgactggtatgat
gcgctgtgcgtcctgctgagacacagtaagaatgtacgctactggtttgcacacaacatc
ctgtttgcctacgccaaccgcttctctgagtacctgctggagtgccccagcgctgaggtc
aggggcgcgttcgccaaactcatcgtcttcattgcacacttctcccttcaagacggaccc
tgcccctcccccaccgcctcctccgccggagcctccacccaaccacaggcgtgtgataac
ctgagtctcagtgaccacctgttgagggctgtgttgaacctcctcaggcgagaggtgtca
gagcacggccgacacctgcagcagtacttcaacctcttcgtcatgtacgccaacctgggg
ctggcagagaagactcagttgttgaagctgagtgtcccagctaccttcatgctggtggct
ctagacgaaggacccggtcctcccataaagtaccagtatgctgagctgggcaagctctac
accgtggtctcccagctggtgcgctgctgtgacgtggccgcacgcatgcagtcgtccatc
aacggtaacccccctctccctaacccgtacggcgatgccaaccagaccaccccggtgatg
cccgtgcagcagctggtgggagagatcctgtttgttaggaccagctatgtgaagaagatc
atcgaggactgcagcaactcagaggagacggtcaagctgctacgcttcagctgctgggaa
aacccccagttctcctctactgtactgtcagagctgctctggcaggtggcgtattcctac
acctacgagctgaggccttacctggacctgctgctgcaaatcctgctcatcgaggattcc
tggcagacacacaggatccacaacgtgctgaagggtataccagacgacagggacggcctg
tttgacaccatccagcgctccaagaaccactaccagaaacgggcctaccagtgtatcaag
tgcatggtggccctcttcagcagctgctctgtggcataccagatactacagagtaacggg
gacctgaagcgtaagtggacgtgggcggtggagtggctgggggatgagctggagaggagg
ccctacacagggaacccccagtacacctacaacaactggtctccccccgtccagagcaac
gagacctccaacgggtacttcctggagcgctcgcactctgcacgcatgaccctggccaag
gcctgcgaactctgccccgaggagtgtcacttaacgaagcccggtgaggccgagtctgaa
gacgacgctgccatgcggaaatcatcctcgccacagcagcttttgccaggggaagggaca
ggacctcagcaacacactgagcccgatgaccaggaagcctctgaagatcaggacacctcc
cctccagaggacacctccctctacccacactcatctcctgggacgaccacacagtttcag
cagaacaaccacccccacggacagccatacacaggccccgctgcccagctcatgaacaac
ccccatcaccttggccctgccccttcctctaccccaggccctgaccccagcacaggcaca
ggcccaggcccaagagcacaagaaaactgggagagcactgaggaggtcccgcccgcctcc
accacccaggcccctacctcgcctaaggagtaa
DBGET
integrated database retrieval system
