Coregonus clupeaformis (lake whitefish): 121536603
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Entry
121536603 CDS
T08357
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121536603
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121536603
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121536603
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
121536603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
PTB
DUF4249
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
121536603
NCBI-ProteinID:
XP_041699936
LinkDB
All DBs
Position
23:complement(8297339..8452103)
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AA seq
1210 aa
AA seq
DB search
MAGRDDKEKPDIKRFSLWYIGWSSLDRRTTLPMLPWLVAEIRRKSEKNESGRETGPVQAR
EVQLVLTPPLIRCIPANNATNSSVFIFEHKVQFISRFIHNSNDLTYFAYLIRSQPDNPKS
EMTCHVFRANDPNQVPEVISSIRAVSKSALKEDSKPKQETDESFYNSQKFEVLYCGKVTV
SHKKAPSTLIDDCIDKFRQHELESKCMHLLSGQQVSTESTPVELIVGGDGDPLSSTTLSE
GLEDDDFTNGGDFGGTGMSNSPSLGSLRGTFPECILEDSGFEEQQEFRTRCSSLVGILQR
KPGEGALKAAPARRRHASAPTNVQPSDADKNRTMLFQVGRFEVNLISPDSKTVVLEKKFK
DISSCSQGVNKTDHFGFICRDPGESGPGQYVCYVFQCASKSLVDEVMLTLNQAFSTAAAL
QSAKTQVKLCEACPMHDLHKLCERIEGLYPPRAKLAIQKYLSQLTDNEQVDIFERVQKMK
PASDQEENELVILHLRQLCGTKQGFHLHIGEAPQNAPNTAAAPADGTGATGGRFKLDILK
NKAKSSLTSSLENIFSRGANRMRGRLGSMGSFERADDSPGNSPPGTPPGFPDDNPDAPQF
RRRAHTFSHPPVKKRISFNDAPTQWGQQGVTGTHSKAPLRRQQSVNPELLQSSNWEGRKR
TLSGCSSDSVSVPLTPRKVSWRQKIYLRVASPMNKPTSMQDPDHFDVRELLPLSPRSFYP
SLDPLANQLPALRDPFTGERPKRTRAHYRALWKTAIHQQILLLRMEKENQRLEASRDELH
IRKIKLDYQEVGTCTKDVQAFWDRKLSVPVRAKVPLDKEEVHNAVSQGVPKGRRGEVWLL
FSHQQRLKYRQPPSRHAPDTPYQDLLMQLTAQQHSILVDLGRTFPTHQYFAAQLGAGQLS
LYNLLKAYSLLDTEVGYCQGISFVAGILLLHMSEDQAFDMLKFLMYDLGFRKQYSPDMTS
LQIQMYQLSRLLHDYHRELYSHLEEHEICPSLYAAPWFLTLFASQFPLGFVARIFDILFV
QGNEVIFKVALCLLCSHEGEILKCDSFETTVDYLKTTIPNLTHTQMEETISKVLEMDISK
QLHTYEVEYHVLQDEIVDTVPQSDDSDRLDKLEKTNNRLKKQNMDLLEILQVERQKIQSL
ETNMENFLSRESKMKHMIRSLEQERQSYQKTIEHMRSCLAPDSLADVEMTRIVKPAQGPN
GKSKPAASKP
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtcgggatgacaaagagaagccagatattaaaaggttttccctctggtacatc
ggctggtcctctttggacaggcggactaccctgcctatgttgccgtggctggtggcggag
atccgaaggaaaagtgagaagaacgagtctggacgcgagacgggtcctgtccaggccagg
gaagttcagctagtgctcacgccgccgttaattcgatgtatccccgccaacaatgccacc
aactcgtccgtcttcatctttgagcataaagtacagtttatctcgcggttcatccacaac
agtaatgacctcacctatttcgcctaccttatccggagccagcccgacaaccccaagtcg
gagatgacatgccatgtcttcagggcgaacgacccaaaccaggtaccagaggtgatcagt
agtatccgtgcggtatcaaagtcagccctaaaggaggactccaagcccaagcaggagact
gacgagtccttctataactcccagaagtttgaggtgctttactgcggcaaggtgactgtc
agccacaagaaggctccctccaccctcattgatgactgcatcgacaagttccgccagcac
gaattggagagcaagtgcatgcacctcctcagcggccagcaggtgtccacagagagcacc
cccgtggagctcatcgtggggggtgacggagaccccctctcctcaaccactctcagtgag
gggctggaggatgatgatttcactaacggaggagattttggcgggacgggcatgtccaac
agccccagcctgggtagcctgcgtgggacctttcctgagtgcatcctggaggactctggc
tttgaggagcagcaggagttccggacacgttgcagcagcctggtcggcatcctgcagcgg
aagcccggggagggggcgctcaaagccgcccctgcacgccgccgccacgccagtgccccc
accaacgtccagccctcggacgccgacaaaaaccgcaccatgctcttccaggtcggacgc
tttgaggtgaacctgatcagtccagacagtaagacggtggtgctggagaaaaaattcaaa
gacatctcgtcctgctctcagggtgtaaacaagacggaccactttgggtttatctgtcgc
gacccgggggagtctggtccgggccagtatgtgtgctatgtcttccagtgtgccagcaaa
tccctggtggatgaggtgatgctgactctgaaccaggccttcagtacggctgcagctctg
cagagtgccaagactcaggtcaagctgtgcgaggcctgccctatgcacgacctgcacaaa
ctctgcgagaggatcgagggtctgtatcctcccagggccaagctggccatccagaagtac
ctctctcaactgactgacaacgaacaggtggacatttttgagcgagttcagaagatgaag
cctgcgtcagaccaggaagagaatgagctggtgattctccacctccgccagctatgtgga
accaagcaggggttccacctccacatcggagaggccccccagaatgcccctaacaccgcg
gcagcaccagcagacggcacaggggcgactggtggccgctttaaactggacatcctgaag
aacaaagccaagagctctctgaccagctcactggagaacatcttttcacggggtgccaac
cggatgagaggccgcttgggaagcatggggagctttgagagagcggacgactctcccggc
aactccccgccaggcacaccccctgggttccctgacgacaatcctgacgccccccagttc
cggcggcgtgcccacaccttcagccacccgcctgtgaagaagcgtatctcgttcaatgac
gcgcccacccagtggggccagcagggggtcactggtacccacagcaaggccccgctccgc
aggcagcagtctgtcaaccctgaactgctgcagagcagtaattgggagggtaggaagagg
accctgtctggatgcagcagtgacagtgtgagtgtacccctcaccccccgcaaagtgtcc
tggagacagaagatctacctgcgggtcgcctcacccatgaacaagcccacatctatgcag
gacccagaccactttgatgtgcgggagctgctgcccctctccccccgctccttctaccca
agtctggaccccctggccaaccaactgccggctttgcgagaccccttcactggggagagg
cccaagaggacgagggcacattaccgggccctgtggaagactgcgatccaccagcagata
ctgctgctgcgcatggagaaggagaaccagagactggaggcgagtcgagacgagctgcac
atccgcaagattaagctggactaccaggaagtggggacgtgcactaaagacgtgcaggcc
ttctgggacaggaagttgagcgttccggtcagagccaaggtcccgctggacaaagaggag
gtccacaatgcagtctctcagggtgtccctaagggcaggcgtggggaagtgtggctcctc
ttctcccaccagcaacgtctgaaataccgtcagccccccagccgccacgccccagacacc
ccctaccaagacctgctgatgcagctcaccgcccagcagcactccatactggttgacctg
ggtcggacgttccccacccaccagtacttcgcagcccagctgggtgcagggcagctgtcc
ctctacaacctgctcaaggcctactctctgctggacacggaggtgggctactgccagggc
atcagctttgtggcaggtatcctgctgttgcacatgagtgaggaccaggccttcgacatg
ctcaagttcctcatgtatgacctgggcttccgcaaacaatacagccctgacatgacttct
ctacagattcagatgtaccagttgtccaggctgctgcacgactaccacagggagctatac
agccacctagaggaacacgagatctgccccagcctctacgcagccccatggttcctcacg
ctctttgcctcccagttcccactcggatttgtcgcacggatatttgatatcctatttgtc
caggggaatgaggtgatctttaaggtggctctttgtctactgtgcagtcatgaaggggag
atattgaagtgtgatagctttgaaaccaccgtggactacctgaaaactacaattcccaac
ctcacccacacccagatggaggagaccatctcaaaggtgttagagatggacatctcgaag
cagctacatacatatgaggtggagtaccacgtgctgcaggatgagatcgtggacactgtg
ccccagtcagacgactcagaccgccttgataaactggagaagaccaacaaccggctgaag
aaacagaacatggatctgctggagatactgcaggtggagcgtcagaaaatccagagcctg
gagaccaacatggagaacttcttgtcacgcgagtccaagatgaagcacatgattcgctcg
ctggagcaggagcgccagtcctaccagaagactatcgagcacatgcgctcctgcctggcc
ccggacagcctagccgacgtggagatgacccgcatagtcaagccagcccaggggccaaac
ggcaagtccaagcccgctgccagtaagccctga
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