Coregonus clupeaformis (lake whitefish): 121536651
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Entry
121536651 CDS
T08357
Name
(RefSeq) integrin beta-2
KO
K06464
integrin beta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145
Phagosome
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
cclu04518
Integrin signaling
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121536651
04517 IgSF CAM signaling
121536651
04518 Integrin signaling
121536651
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121536651
09142 Cell motility
04810 Regulation of actin cytoskeleton
121536651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121536651
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121536651
04515 Cell adhesion molecules [BR:
cclu04515
]
121536651
04090 CD molecules [BR:
cclu04090
]
121536651
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121536651
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121536651
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin beta subunits
121536651
CD molecules [BR:
cclu04090
]
Proteins
121536651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
PSI_integrin
EGF_integrin
vWA_SIBA-E
I-EGF_1
EGF_2
Motif
Other DBs
NCBI-GeneID:
121536651
NCBI-ProteinID:
XP_041699998
LinkDB
All DBs
Position
23:15964497..15985493
Genome browser
AA seq
777 aa
AA seq
DB search
MYQCVSLLLLLMGRGVLSQKVEVCSKTVINSCSDCIRSGAYCVWCKQLNFTKPGQQEAAR
CDTLAQLLEKGCMERDIINPQNILSVSKNTALSTSTFAKEEPTQLRPQEVNLKLRPGLPR
TFKLDFQRVEGYPVDLYYLMDLSYSMEDDLRSIKSLGNELFKALQGITKQGRIGFGSFVD
KTVLPFTNTNPEKLKKPCADKEQFCQPAFGYRHVLSMTGNEADFKREVDKQRISGNLDSP
EGTLDAIMQAAVCGDRIGWRNSSTRLIVLTTDDGFHMAGDGKLAGILEPNDERCYMDNQL
YSKSNYMDYPSVGQVASQLEKNNIQPIFAVTKNMENVYRELSRMIPKSEVGVLSEDSKNV
VELIEAAYNRLSSKVTVTHDALPDNVRVTYTPLCPGGGPAGDKGVCDNVKVGQMVSFNVT
VTADECIDGELSFLIGPLGIKDKLKVNLSTRCECDCDDPQEDNHPYCNGKGKVNCGMCSC
KAGFVGQKCECSIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCYALQGGSTYYGTHC
ECENESCEKFQNKLCGGNGKCRCKNCECNPDYEGTACQCKKSDEQCRTPGGSVCSGRGTC
QCNQCKCIEGYQRPYCLTCPACLTPCITKGKCIECLGFQTGPFSKNCSQTCKSINEFEMV
ETLPPGKPCDVRDVENCRVFFTIKQLDGEDNYSAQILKTRECPELPNIYAIIGGSIVVVA
MIGFLILLLIKGLIHMNDLKEFRKFENEKKKSKWAKGENPLFNSATTTVANPTFTGE
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtgtgtgtctctcctactcctgctgatgggcagaggtgtgctctcccagaaa
gtggaagtatgttccaaaacagtgatcaactcctgcagcgactgcatcagatcaggagcg
tactgcgtgtggtgcaaacaactgaacttcaccaaaccagggcagcaagaagcagctcgc
tgtgacaccttggctcagctattagagaagggctgcatggaaagagacatcatcaacccc
cagaatatccttagtgtgtctaagaacaccgccctgtccaccagtacatttgccaaggag
gaacccacccagctgcgtcctcaggaggtcaatctgaagctcagaccagggctgcctcgg
acgttcaagctggactttcagagagtggagggctatcctgttgatctctattacctgatg
gatctctcctactccatggaggatgatctgaggagcatcaagtctctgggaaacgagctc
tttaaagctctgcaaggcatcacaaaacaagggcgaataggcttcggctcttttgtagac
aagactgtcctgcctttcactaacaccaacccagagaagctgaagaagccatgcgccgac
aaggagcagttctgtcaacctgcctttggctacaggcatgttcttagcatgacagggaac
gaagctgactttaagagggaggtagacaagcaacgcatctctgggaacttggactcccct
gaagggacgctggacgccatcatgcaggctgcagtctgtggggacaggattggctggagg
aatagcagcacccggctaatcgtcctgaccaccgatgatggcttccacatggcaggggat
ggcaagctggctggcatactggagcccaatgatgagagatgttacatggacaaccaactg
tacagcaagagcaattacatggactacccatctgttggtcaagtggcttcacagttagag
aagaacaacattcagccaatctttgctgtgacaaagaatatggagaatgtatacagggaa
ctcagtagaatgatccccaagtctgaggtgggagtactgtctgaggactccaaaaatgtt
gttgaattgatcgaagctgcctacaataggctctcctccaaagtaacggtgactcatgat
gctctccctgacaatgtgagagtcacttacactccactctgtcctggagggggacccgca
ggggacaagggggtctgtgacaacgttaaagtaggacagatggtgtctttcaacgtaaca
gtgacggcagatgaatgtatagatggagagctgtcttttctgattggcccattgggtata
aaagacaagctgaaggtgaacttgtcgactcgctgcgagtgtgattgtgatgacccccag
gaggacaatcacccatactgcaacgggaagggcaaagtcaactgtggcatgtgcagttgc
aaagccggcttcgtgggccagaagtgtgagtgctccattggggagaaggatgagagctct
ctgagggcggcatgccggaaggacaacggcacggagtgcgaaggacgaggggactgtgtg
tgtggcatatgccagtgctatgccctacaaggcggcagcacctactacggcacgcactgc
gagtgtgaaaacgagagctgcgagaagttccagaacaaactgtgtggagggaacgggaaa
tgccgttgtaaaaattgcgaatgcaaccctgattacgaaggcaccgcctgccaatgcaag
aagtcggacgagcagtgtcgcacaccaggcgggagtgtgtgcagcggcaggggcacatgc
cagtgtaaccagtgcaagtgtatcgagggctaccagcggccctactgtctgacctgcccc
gcctgcttgaccccctgtataaccaaggggaaatgcatcgagtgtctgggctttcagaca
ggcccgttcagtaagaactgctcccagacctgtaagagtattaatgaatttgagatggtg
gaaacattgccacctggtaagccttgtgacgtgagggatgtggagaactgccgggtgttc
tttaccattaaacagttggatggagaggacaactactccgcccagatactaaagaccaga
gagtgtcccgagttgccaaacatctacgccatcattggaggctccattgtggtagtggcc
atgatcggctttctgatcctgctcctcatcaaaggcttaatccacatgaatgacctgaag
gagttccgcaagtttgagaatgaaaaaaagaaatccaagtgggcaaagggagagaatcca
ctattcaacagtgcgaccaccaccgtggctaaccctaccttcactggagaataa
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