Coregonus clupeaformis (lake whitefish): 121536680
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Entry
121536680 CDS
T08357
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121536680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121536680
Spliceosome [BR:
cclu03041
]
Complex A
U1 snRNP components
U1 related factors
121536680
Complex B
121536680
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
Motif
Other DBs
NCBI-GeneID:
121536680
NCBI-ProteinID:
XP_041700047
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All DBs
Position
23:complement(17955364..17992299)
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AA seq
893 aa
AA seq
DB search
MSSDGNNGQSQAPSFAGVPPSGMPPPFMGPPGMLPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAATMQPTGPPGVDTAVTAVPGTVGTT
NGSPQDDQPKNKSVWTEHKSLDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYK
SDNGKAYYYNSQTKESRWTKPKELEDLEAMIKAEENGMSEVGAPGTVITPTLQLDSAVAM
ATMMMEMPAMMPATTVSVEQMSLVPMHVAEVNTDSPVNSTEDVAGVEVSASNDASKEERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEEARIKYKESKETYQRFLESHEKMTSTTRYKKAEQMFAELDVWSTVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDEL
HDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKDSAFEDVTLESERKRIFK
DFIHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSQSKSPS
ERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDGKREKDQEKEKEN
DKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcaccttcttttgctggggtcccaccc
tcaggaatgccaccgccttttatgggaccaccaggaatgctgcctcattacccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggaatgatg
ccacctggcatgatgccaccaatgggagggccaccgatgggacagatgccaggcatgatg
ccaccaatgatgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacagctgtcaccgctgtgcctggaacagttggtaccaca
aatggctcgccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtct
ctggatgggaagacctactactacaacacagagactaagcagtcttcctgggaaaagcct
gacgacctgaaatctcctgcagaacaaatgctgtctaaatgcccatggaaggagtataaa
tcagacaatgggaaggcgtactactacaactcccagactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatgtcggag
gtaggcgctcctggcactgtcatcacccccacccttcagctcgacagcgctgttgcaatg
gcaaccatgatgatggaaatgccggccatgatgccagctacaaccgtctcagtggaacag
atgtccctggtgcccatgcatgtagctgaggtcaacactgactcgcctgtcaactccaca
gaggacgtggccggcgtggaggtctcagccagtaatgacgcctcaaaagaggagaggcca
gagctagtgaagaaaacatacaagtggaacacgaaagaagaggccaagcaggccttcaaa
gagctcctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagccatgaaaatg
atcatcaatgacccacgctacagtgctctgccgaaactaagtgagaaaaagcaggccttc
aatgcttacaaggtgcagacggagaaagaggagaaagaggaggctaggatcaagtacaag
gagtccaaggaaacgtatcagcgatttttggaaagtcacgagaaaatgacatctaccacc
agatacaagaaagcagagcagatgtttgcggagctagatgtgtggagcaccgtcccagag
agggacagactggagatctatgaagacgtcctgttctacctagccaagaaggagaaggag
caagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatg
gccaatgtgacgtaccgcaccacctggtccgaggcccagcagtacctgttggacaacccc
accttcgcagaggacgaggagctccagaacatggacaaagaggacgctctgatctgtttc
gaggagcacatccgagcgctggagaaggaggaggaggatgagaagcagaagacactgctg
agggagaggaggagacagcgcaagaacagagagtccttccagaaattcctggacgagctc
catgacaacggtcagctccactccatgtctgcctggatggagatgtaccccaccgtcagc
tccgacatccgcttcgccaacatgctgggccagccagtttatggtgtctattctgcaggc
tccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccacgac
gagaagaggatcatcaaggatatcctgaaggacaaaaacttcttggtcgaggtcaacact
agctttgaagactttggcactgtgattagctcagacaagagagccacgacgctagacgca
ggcaacatcaagctagccttcaacagcttgctggagaaggcggaggctcgggagagggag
cgggagaaggaggaggccaggaagatgaagaggaaagaggctaccttcaagagcatgttg
aagcaggccaccccggccctggaaccagaggctacctgggaaggagtccgagaaagattc
ctcaaagactctgcattcgaagacgtgactctcgagtctgagaggaaaaggatattcaag
gacttcatacatgtcttagagcacgagtgccagcatcatcactccaagaccaagaaacac
tccaagaagtccaagaagcaccacaggaagcgctcccgctctcgatcgggctcagagtct
gaaggtgaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccgtcc
gagcgctcctccagcggggaatctgacagaagttataagaagtccaagaagcacaagaag
aaggggaagaagaggcgtcacaagtcgcaatctcctgaatctgaaggcgaacggaaagag
aagggaggaagagagcgggacggcaagcgggagaaggaccaggagaaagagaaggagaac
gacaagtcccgggggaagagtcgctccgaatccaagcagaagtcacctaaaaggaaatct
accaaggaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggag
aagaggaggagaactctactggaacagctggatgctccttga
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