Coregonus clupeaformis (lake whitefish): 121536871
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Entry
121536871 CDS
T08357
Symbol
rnf17
Name
(RefSeq) RING finger protein 17 isoform X1
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121536871 (rnf17)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121536871 (rnf17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Agenet
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4
PDDEXK_14
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
121536871
NCBI-ProteinID:
XP_045062447
LinkDB
All DBs
Position
23:complement(5563365..5593671)
Genome browser
AA seq
1622 aa
AA seq
DB search
MSDRSPRADNPNSVVCNICGIAYTLPEDEIVGNLPNVLLCSHIFCTTCLRSLEFNNVILC
PECKVESTLPEGGVEGLQVDSRIIGLIYTAKMNKMKRDRPRHHRVKSSSSPVKEDTKQGP
DVETALKAVEEALSQASENMANLDNIHQTLVKGLTVQVKREKARLLMEIDEAMDRAFTIL
KRRKGALVAELTNMEQHFPSSRRELGRVEERMRALDTAMQKAKQVGQHPSLESYCDLEQL
LETLQAPVDVQLFDLKCLSLGSGLSCIAQQDALGRSLKACLKINIGNAKILTEEPIHRDR
GDRERPQEQQESQRMMRPPPPSTREPVPPRQEQDSLRMTRHTRGLSPNPGPRPFPSSSPV
SDSGPNVIIEEIIEEIEQGGEGEDEVSLKSCHQVTTASSKTTAAGFSTGVVPAHRSELQQ
ASERQRAQRSNKKIQEELLHVSQGKVFQEWVMVTHVVNPNHFYIRHVAEQRACILLSKKI
NSLCSGERGLFTASDILETGSTVFVKWKEGMWCRATLTELFQRGHLDPVRSCPVPELHRI
RVYFQDYGFCQGIAMQSEEAGPDLFIRDMNERLRRVDVAGQSEMSRWLPQAVKCSLKDIV
PADLTKGWSAEAQDEFRHVVGSASVEMQVFGQERDALLVDLKKAPMDSGSSNMPMSLREY
LVFLELARFYSPVAWNAKTVPCGRRPLQFYPPVFPRTNVELNAVVSHIDTPSHFYIQLVD
NMEFLLLTAKLQECYSYDCPSRGTRGEDQDLEVYCPILDQACVARFDDKVWYRAHVIGIP
GGRKVEVQFVDFGNKKILSVNDLRKIKDEFFALPAMAIQCYLADVIPLEEAEMWSDMCTE
KFKSLADQRLVTAVATEAGRRGRGLPVRLFETSDSSEPLANIGDLLVNDQLACFKKGIKS
KDTQAPVVDTTVWDPPFEGLLGESEPAPASLGQETPEQDPLEIQPYLMLPANLKDMKVRV
THVVSPGSFYVQLLQMDTQLKRVYELLKQEYARTEPEEMEWKADMYCAAYNNGVWERGQL
CSPVSLGYIAEVVRCDFGNKVKLHVNNLRPLLPSLVGCQVLECSLSDIRPAGGRSTWTAT
ACDFISYYLTGAMAIMTIKENKEQRPVPVSLYCSNRAGQDVSIADFLVSEGLALKERKPR
ASPMPKLEELSDSKFKGLQNRTPNTENQPTAPMPPKPAPRTKPSPEKVKTHAYCPPELPH
CGRTQMTISAIGEDGLIHAMTHHAGRQFEQLRERLQQHIKTLPRLKPYTWKSVLGCAVMG
SDMLWYRGEVLEVIGGHVKVRYVDQGLVENIPVCHVYPTVLCEDIPQLCMPCQLHGVIPV
GRTWQWDAVALLKELLLNRCVDMQVMELPEDPLGCLTVQISLDGMTLSRIMVHHQHASVD
QAIAATQEELVVSSRLDLDDWDIDTEGLEDPEPVLRVFSYPDLPEKGERFRVRIKHLRTP
NEVFLYPLDGSSCEESGGESLEEALKRVHDRMDRLAMLSDFSIEAPCLAEYSDGKYYRAK
LLGFAGLNPVKVLVRHVDFGSDDTLPTHKLRQIPAHLLRFPCKAIKVRVAGFRPPRLNLE
KERLSYRPEWSMKAALEMIDLLHSCCTASVTATEPELSVFLYDEDGALVYLPLVEKGLAD
FD
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagatcgcctcgagccgacaacccgaactctgtggtttgtaacatatgcggt
attgcttacactttaccagaggacgaaatcgttggcaaccttcccaatgtcctcctgtgt
tcccacatcttctgcactacctgtctgcgctcgctggagtttaacaatgtaattctgtgc
cctgaatgcaaggttgagtccactcttcctgaaggaggggtggagggactgcaggtggac
agcagaatcatcggcctcatctacacagccaaaatgaacaaaatgaaaagagacagacca
aggcatcacagagtcaaatcctcatcttcacctgtcaaggaggacacaaaacagggtcca
gatgtagagacagcactgaaagcagtagaagaggctctgtctcaggcctccgagaacatg
gccaatctggacaacatccatcagactctggtgaaaggtctgacggtgcaggtgaagaga
gagaaggccagactgctgatggagatagatgaggctatggacagggccttcaccatcctc
aaaagaaggaagggggcgttggtggcggagctgaccaacatggagcagcacttcccgtcc
agcaggagggaactgggccgggtggaggagaggatgagggccctggacacggccatgcag
aaggccaagcaggtcggacagcacccctccctggagagctactgcgacctggagcagttg
ctggagaccctgcaggcgcctgtggatgtccagttgtttgacctgaagtgtctgtctctg
ggctctggactgagctgcatagctcagcaggatgcactgggcaggagtctgaaggcgtgt
ctgaagatcaacattgggaatgccaagattctgacagaagagccaatccacagagacaga
ggagaccgagagaggccccaggagcagcaggagagccaaaggatgatgaggcctcccccg
cccagcaccagagagcctgttccccctcgccaggagcaggacagcttgaggatgactagg
catacccggggcctctctcccaaccctggccctcgccccttccccagctccagccctgtc
tcagactccggacccaacgtcatcatagaggagattatagaggagattgaacaaggagga
gaaggggaggacgaagtcagtttgaaatcctgccatcaagtcaccacagcctcatccaaa
accactgcagcagggttctcaactggagttgtcccagcccaccggtctgagctgcagcag
gccagtgagagacagagagcccagaggagcaacaagaagatccaggaggagctcctccat
gtcagtcaggggaaagtgttccaggagtgggtgatggtgacccatgtggtgaaccctaac
cacttctacatccgccacgtggcagagcagagggcctgtattctgctgtccaagaagatc
aactccctctgctctggagagagaggactgttcacagccagcgacatactggagactggc
tccacagtgtttgtgaagtggaaggaggggatgtggtgtcgggccaccctgacagaactg
ttccagagaggtcacctggacccggtccgcagctgtcctgttcccgaacttcaccgtatc
agagtctacttccaggactacggcttctgccagggaatcgccatgcagagtgaggaggca
ggtccagacctgttcatcagggacatgaatgagcgtctgagaagagtggacgtggccggc
caatcagaaatgagccgctggctccctcaggctgtcaagtgttccctcaaggacatcgtg
cctgcggacctgactaaaggctggagtgcggaggcccaggatgagtttcgtcatgtggtg
ggctcagcctcagtagagatgcaggtgtttggtcaggagagagatgctctgctggtggac
ctgaagaaagcccccatggacagcggttccagcaacatgcccatgtccctccgagagtac
ctggtcttcctcgagctcgccaggttttactctccggtggcgtggaatgccaagactgtg
ccgtgtggcaggaggcctctccagttctaccctcctgtcttccctcgtaccaacgtagag
ctcaatgctgtggtgtcccacatagacacaccctcacacttctacatccaactggttgac
aacatggagttcctgctgctgacagccaagctgcaggagtgttacagctatgactgcccc
agcagggggaccagaggagaggaccaggacctggaggtctactgtcctatcctggatcag
gcctgtgtggcacgctttgacgacaaggtctggtacagggcccatgtcataggtattccc
gggggcaggaaggtggaagtccagtttgtagactttggcaacaagaagattctgtcagtc
aacgacctgaggaagatcaaggatgagttctttgccctcccagccatggccatccagtgc
tacctggctgatgtgattcctctggaagaggctgagatgtggagcgacatgtgtacagag
aagttcaagagtcttgctgaccagagactggtgaccgctgtggccacagaggctggtcga
aggggcaggggtctgccagtcaggctgtttgagaccagtgattccagcgagccgttagca
aacatcggagatctgctggtcaatgaccagctggcctgcttcaagaagggcatcaaatct
aaggacacccaggccccggtggtagacaccacagtgtgggaccctccattcgagggtctt
ctgggtgagtctgagccagcccctgcctcgctgggccaggagaccccagagcaggacccc
ttagagatccagccctacctgatgctgccggccaacctgaaggacatgaaggtccgggtg
acccacgtggtctcacccgggagcttctacgtccagctgctacagatggacacccagctc
aagagggtgtatgagttgttgaagcaggagtatgcccgtacagagcccgaggagatggag
tggaaggcagacatgtactgtgctgcctacaacaacggggtctgggagaggggccagctc
tgctctcctgtttccctcggctacattgctgaggtggtacgctgtgattttggcaacaag
gtgaaactccacgtgaacaacctgagaccactgctgcccagtctggttggctgtcaggtg
ctggagtgttccctcagtgacattagacctgcgggtggtcgttccacctggacagccaca
gcatgtgatttcatctcctactacctgacgggagccatggccatcatgaccatcaaggag
aacaaagagcagcgtccggtgccggtctctctgtactgctccaaccgggccgggcaagac
gtcagcatcgcagacttcctggttagtgagggcctcgccctgaaagagaggaagccacga
gcgtcccccatgcctaaactagaggagttatcagactccaagttcaagggccttcaaaac
aggacacctaacacagaaaaccagcccactgcccctatgcctcccaagccggccccccgt
accaagccctccccagagaaggtgaagacccatgcctactgcccccctgagctgccccac
tgtggacgcactcagatgaccatctctgccatcggagaggacggactcatccacgccatg
actcaccacgcagggcgccagtttgagcagctgcgggagcgtctacagcagcacataaag
accctgcccaggctgaagccctatacctggaagagtgtcctgggctgtgctgtcatgggc
tctgacatgctctggtacagaggggaggtgctggaggtcatcggaggtcacgttaaggtg
cgctacgtggaccagggtctagtggagaacatcccagtgtgtcacgtctaccccacggtg
ctgtgtgaggacattccccagctctgtatgccctgccagctgcacggagtcatccctgtg
ggcaggacgtggcagtgggatgctgtggctctgctgaaagagctgctgctaaaccgctgt
gtggacatgcaggtcatggaactgcctgaggaccctctgggctgtctgacagtacagatc
tctctggatggcatgactctaagcagaatcatggttcaccaccaacacgcctctgtagac
caggctattgcagccacgcaggaggagctggtggtgtcatctcgcctagatctagacgac
tgggacattgacacagaggggttggaggacccagagccagtactaagggtgttctcatac
ccagacctgcctgagaaaggagaacgcttccgggtcaggatcaaacacctccggaccccc
aacgaggtgttcctgtaccccttagatggcagtagttgtgaggagtctggtggggagagt
ctggaggaagctctgaagagagtccatgacaggatggaccgtctggccatgctctcggac
ttctccattgaggccccgtgtctggcagagtacagtgatgggaagtactaccgggccaag
ctgctgggcttcgctggcctcaaccctgtcaaggtcctggtcagacacgtggactttggc
tctgacgacaccctgcccacacacaagctgcgtcagatcccggcccatctcctgcggttc
ccctgtaaggccatcaaggtgcgggtggcgggcttcagacccccccgcctcaacctggag
aaggagcgcctgtcctaccggccagagtggagcatgaaggctgccctggagatgatcgac
ctgctgcacagctgctgcaccgcatccgttaccgccactgaacctgagctgtctgtgttc
ctgtatgacgaggatggagctctggtctacctgcctctggtggagaaaggactggctgac
tttgactga
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integrated database retrieval system
