Coregonus clupeaformis (lake whitefish): 121536892
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Entry
121536892 CDS
T08357
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cclu03037
]
121536892 (ift88)
Cilium and associated proteins [BR:
cclu03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
121536892 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_6
TPR_14
TPR_7
TPR_16
TPR_11
ANAPC3
ARM_TT21_5th
SNAP
TPR_9
TPR_10
TPR_17
TPR_CcmH_CycH
TPR-S
ARM_TT21_4th
MIT
TPR_15
ARM_TT21_N
HAT_PRP39_C
ARM_TT21_2nd
Coatomer_E
ARM_TT21
DUF6584
DUF2225
SHPRH_helical-1st
Consortin_N
ARM_TT21_C
HEAT_Nup120
RNPP_C
Motif
Other DBs
NCBI-GeneID:
121536892
NCBI-ProteinID:
XP_041700452
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All DBs
Position
23:complement(33668363..33712708)
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AA seq
860 aa
AA seq
DB search
MEHVHLAAEEDDLYSGYNDYNPTFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RALGTSFGVESRFGSESRLLKSRMPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSAMTR
GSTFDPLGQSKGPAPPLEGKSEDTPDEKVKILEKKVNDLIEESCLAHGRGDLQLSLDRAK
EAGRKERALVRQREQSGNADHINLDLTYSVLFNLATQYANNDMYAEALNTYQVIVKNKMF
SNAGRLKVNMANIYFKQKNYPKAIKFYRMALDQISNSHKEMRIKIMQNIGVVFIRMGQYS
DAITSFEHIMSESPNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGIDEEDKYIPPND
DTHANLVIEAIKNDKLHQMERERKALAEKFIMTSAKLIAPSIEATFAAGFDWCVDMVKSS
QYVELANDLEINKAITYLRQRDFNQVGAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDY
DQADRYADLAMTADRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGL
TYKRLGRLEESLDCFLKLHAILRNSAQVMWQLANLFEMLEDPHQAIEWLMQLITVTPTDP
QVLAKLGELYDSEGDKSQAFQYYQESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERA
TLIQPTQVKWQLMVASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGMKEV
QDYATKLKKVEKMKEIREQRVKSAREGSARGTRREGSASSEVDVKAVSHPEPKHSPLLDQ
GRDSGHSSHGTSAKGERLSAKMRALPGSNEPYEASSQRDIDASYVDPLGAPMERPKTAAK
KRNEDDDFADEELGDDLLPE
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgtacatcttgctgctgaggaagatgacctgtactcgggctacaacgactac
aatccaacatttgattcagaggaacttgacaatgatgctggttttcagcaagcagtcaga
acaagccatgggagaaggccccccatgactgccaagtttcctggcactgccattggagga
cgggctttggggacctcttttggagtagagagcaggtttggcagtgagagcaggcttctg
aagtctaggatgcccatggcctcatctatgggcagacccatgactggtgctgtacaggat
ggagcagctaggcctatgactgcagtcagagcagcaggctactcttcagccatgaccaga
gggtctacatttgacccactgggtcagtccaaaggaccagctcctccgttggagggcaaa
agtgaagatacgccggatgagaaggtgaagatcctggagaagaaggtgaacgacctgata
gaggagagctgcctggcgcacggccgtggagacctacagttgtccctagatagagccaaa
gaggcagggcggaaggagagagcactggtgagacagagggagcagtcaggcaatgcagac
cacatcaacctggacctcacatactctgtcttgtttaacttggcaactcagtacgctaac
aatgacatgtacgcggaggccctgaacacttaccaggtcatcgtaaagaacaagatgttc
agtaatgcaggaaggttaaaagtgaacatggccaacatctacttcaagcagaaaaactac
cccaaggccatcaagttctaccgcatggccctggaccagatctccaactcccacaaggag
atgaggatcaagatcatgcagaacatcggtgtggtcttcatccgcatgggccagtactct
gacgccatcacctcctttgaacacatcatgagcgagagccccaacattaagacaggcttt
aacctgatcctgtgttactacgccatcggagacagagagaggatgaagaaggcctttcag
aagctcatctgtgttcctctggggatcgacgaggaggacaagtacatcccacccaacgat
gatacacatgccaacctggttattgaagccatcaagaacgacaagcttcaccagatggag
agagaacgtaaagccctggctgagaaattcatcatgacatcggccaagctcatcgcccca
tccatcgaggcgacgttcgccgccggatttgactggtgtgtggacatggtgaagagttcc
cagtacgtagaactggccaatgacctagagatcaacaaagccatcacctacctgagacag
agggacttcaaccaggttggtgctgtggagactctgaagacgtttgagaagaaagacagc
agagtgaagagtgctgcagccactaacctctccttcctctacttcctggagaaagactac
gaccaggctgaccgctatgccgacctggccatgacagccgaccgctacaacccagcggcg
ctcatcaacaagggcaacacagtgtttgtgaagaaggactatgagaaggctgcagagttc
tacaaggaggctctccggaatgactcgtcctgcactgaggccctatataacctgggtttg
acctataagcgtctggggcgtctggaggagtctctggactgttttctgaagctccacgcc
atcctgaggaatagcgcccaagtcatgtggcagctagccaacctctttgagatgttggag
gacccccaccaggcaatagagtggttgatgcaactgatcactgtgacgcccacagacccc
caggtgttggccaaactgggagagctctacgacagcgagggagacaagtctcaggcgttt
cagtactaccaagagtccttcagatatttcccctccaacattgacgttattgagtggctg
ggggcctactacattgacactcagttctgtgagaaggccatccagtactttgagagagcc
acactaatccagccaactcaggtgaaatggcagcttatggtggccagctgctacagaaga
agtggaaactaccagaaagccctggagacttacaaagacatccaccggaaattcccggaa
aacgttgaatgcctgcgtttcctggtgaggctgtgcacagacatggggatgaaagaggtc
caggactacgccaccaaactgaagaaggtggagaagatgaaagagatcagagaacagcgg
gtgaagtcggcgagggagggcagcgctagaggcacccggagagagggcagcgccagcagt
gaggtggatgtcaaagcagtctctcaccctgagcctaaacacagtcctctgctggaccag
gggagagacagtggacacagcagtcatggcaccagcgccaagggggagaggctgagcgcc
aagatgagggcacttcctggctccaacgaaccctacgaggccagcagccagcgagacata
gatgcatcttacgtggatccactgggggctccgatggagagaccaaagactgcagctaag
aagcgcaatgaagatgacgactttgctgatgaagagctgggagatgacctactaccggag
tag
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integrated database retrieval system
