Coregonus clupeaformis (lake whitefish): 121536937
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Entry
121536937 CDS
T08357
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR-like isoform X1
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121536937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
cclu04050
]
121536937
Cytokine receptors [BR:
cclu04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
121536937
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Death_EDAR
TNFR_c6
DUF4501
SCIMP
Motif
Other DBs
NCBI-GeneID:
121536937
NCBI-ProteinID:
XP_041700535
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All DBs
Position
23:41125997..41169874
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AA seq
484 aa
AA seq
DB search
MFQKGSQIESLFLCLMLVSCPPSLRSEYSSCGEFEFYNQTLSSCQPCPPCQPGQEPHMNC
GYGTKDEDFVCVSCPAGKYSKGKYEICRRHKDCEGLYRATVLTPGTPDSDADCGPCLPGY
YIQENRPRNLYGMVCHSCQNAPRNTKECMLTKVVSSGKVPSVSTTMFPHPHKDSTGQGHL
ATALIIAMSTIFIMAIAIVLIIMFYILKAKPSGQACCSGQVVKAVEAQTNKQEDKKDVPD
NVVIFSEKDEFDKLKPTPPKTVKSENDASSENEQLLSRSMDSDEEAALERQGAADPNPSL
CLLNLGNKPDLCLLSLGLLDRDKTGSNPTSPINANNISNGNANIINNNNNNKATGIQSRR
KKILDLYARACSVAEGLSPTELPFDCLEKASRMLSSSYSSEAAVVKTWRHLAESFGLKRD
EIGGMSDGLQLFERISTAGYSIPDLLTRLVQIERLDAVESLCSDVLGGGDTHTVPLSSPR
CASV
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgttccagaaaggaagtcagatagagtccctcttcctctgtttgatgttggtgtcctgt
cctccctctctcagatcagagtacagtagttgtggagagtttgagttctacaaccagacc
ctcagtagctgccagccatgcccgccatgccaacctggacaggagccccacatgaactgt
ggctatgggactaaggatgaggactttgtgtgtgtgtcgtgtccggcggggaagtactcg
aagggaaagtacgagatctgcaggagacataaggactgcgaaggtctgtaccgcgctaca
gtactcacacctgggacaccagacagtgacgcagactgtggaccctgcttacctgggtat
tacatccaggagaaccggcccaggaacctgtatggaatggtctgtcactcgtgtcagaat
gcaccacgcaacactaaagagtgcatgcttaccaaagttgtgtcgtcaggcaaagttccc
agtgtctcaaccaccatgttccctcaccctcacaaagactccacaggacagggtcaccta
gcaaccgctctcatcatcgccatgtcaaccatcttcatcatggccattgccatcgtcctc
atcatcatgttttatatcctcaaagccaagcccagcggacaggcatgctgctctggtcag
gtggtgaaggctgtggaggctcagaccaacaaacaagaggacaagaaagatgttccagac
aacgttgtaattttctctgaaaaggatgaattcgacaaactcaaacccacgcctccgaag
acggtgaaaagtgagaatgatgcatcgtcagagaacgagcagctgttgagtcgtagtatg
gacagtgatgaggaggcagccttggagaggcagggagcggctgatcctaaccccagcctc
tgtctcctgaacctgggcaataagccggacctctgcctgctctctctagggctcctcgac
agggataagactggatccaaccccaccagccctatcaacgctaacaacattagcaatggc
aacgctaacatcatcaataacaacaacaacaacaaggctacagggattcagagccggagg
aaaaagatcctggatctgtatgctagagcctgcagtgtggccgagggtctgagtcctaca
gaactaccatttgactgtctggagaaggccagtcgtatgctgagctcctcctacagtagc
gaggcagccgtggtgaagacctggagacacctggcagagagctttggcctgaagagggat
gagatcggagggatgagtgacggcctgcagctgtttgaaaggatcagtacagccggctac
agcatcccagacctgctcaccagactggtgcagatagagagactggatgctgtggagtca
ctgtgttctgatgtactgggaggaggagacacacacactgttcctctgtcctcaccgcgc
tgtgcaagcgtctga
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