KEGG   Coregonus clupeaformis (lake whitefish): 121536974
Entry
121536974         CDS       T08357                                 
Name
(RefSeq) integrin alpha-4
  KO
K06483  integrin alpha 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu04810  Regulation of actin cytoskeleton
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121536974
   04514 Cell adhesion molecules
    121536974
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121536974
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121536974
   04810 Regulation of actin cytoskeleton
    121536974
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121536974
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121536974
   04515 Cell adhesion molecules [BR:cclu04515]
    121536974
   04090 CD molecules [BR:cclu04090]
    121536974
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121536974
  Exosomal proteins of other cancer cells
   121536974
Cell adhesion molecules [BR:cclu04515]
 Integrins
  Integrin alpha subunits
   121536974
CD molecules [BR:cclu04090]
 Proteins
  121536974
SSDB
Motif
Pfam: Integrin_A_Ig_1 FG-GAP Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP_3 DUF5370
Other DBs
NCBI-GeneID: 121536974
NCBI-ProteinID: XP_041700603
LinkDB
Position
23:39407704..39439086
AA seq 1023 aa
MERKKPGNLSCCWSFLLSYFCCCSLTDCYNLDVDHPISFSGPNGSLFGYSVLLHKNKKNT
WLLVGAPVANSPSYPAVKEPGAIYKCSISDKRECQQISTGVDSCGKTCFSESDNQWLGVS
LSRQPGDGHVLACGHRWKNVFYSRNDNQNKLPHGVCYRYEADLKQAQPLIPCYKDHQRKF
GEDYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVYNTSSRVLSAYVDDNSTVLYGSYL
GYSVGAGHFLHPDSTEIVGGAPQHGQTGKAYLFRAEENMLKIISEVKGSKLGSYFGASVC
AVDLNGDGLSDLLVGSPMYSTVREEGQVHVYINQGAANMKEAEFQLVGSNSYAARFGETI
TDLGDIDDDGFPDVAVGAPQEEELRGAIYIYNGRKTGISQTFSQRITSSVLGNELKMFGQ
SVSGGIDVDGNGYQDVAVGAFLSDSAVVLRTRPVVVVEAFMPLPVSVNRYVALCSDNGLP
AVCINATVCFRVHARLFTSSIELQYNLTADTHHKESFPSRFHFHGNGTSNATTGRVKIRH
DQLTCVPHQAFMRKDVQDIFTPIRFEVTYALREHTVHNGGSTFPALKPILQQRGEHGNLV
ANKTMFARYCSLANCSTNLQVSAQLVLPQRHNNMPYFALGNGKTIMLNTALVNTGDDAFL
PRLQLRFPSNLHYIKVLDTEEKFVSCDISEENKTIVGVDCSVGNLYLSSGAKVNISFLLD
VNQSSSVGDVSIFINASGDNYENEDLLHDNSATLMLPLRYGVDVNIHGFMTPTSFVFGDQ
EPIPVDCYTEAFNYTYKVVNIGPSKSLNTIVEIDIPKILSPYPYRLLHITDFQTSLGECS
IKNGSIAVEDDCEVPQSSFIKELVFFFSKTSKRKMFCAHGDGLCLTLECRLGDMDIGKEA
SIHMEVKLNPTVLQLSPGRHGVMLMESTGIITSPREDPQTILLQQIPIAQVVLEAHFSQK
PQAAVEVFIIVVSLLVGLLILTLLIFALWEAGFFKRQFKKEDEISKDSWDYVPKNLTKTE
SRS
NT seq 3072 nt   +upstreamnt  +downstreamnt
atggagcgaaagaagccggggaatctttcttgctgttggagctttcttctctcatacttc
tgttgctgtagtctcactgactgttacaatttggacgtagaccaccccattagtttcagt
ggaccaaatggatctttatttggatattctgtattgttacacaagaacaagaaaaacaca
tggttattagtcggagctccagttgcgaattcaccttcctacccagccgttaaagaacca
ggagcaatttataagtgcagcatctcggacaagagagaatgtcagcaaatatcaacaggt
gtggatagttgtgggaagacttgcttctctgagagtgacaaccagtggctcggagtcagc
ctgtccagacagcctggtgatggccatgtattggcatgtgggcatcgttggaagaacgtg
ttctattccaggaacgacaaccagaacaagctgcctcatggtgtctgttacagatacgag
gctgacctcaaacaggctcaaccactcatcccatgctacaaagatcaccaacggaagttt
ggtgaggactacggatcatgccaagcaggaatatccaactttctgactgaggacttgata
ataatgggagccccagggacatcgtactggactgggtctgtcctggtctacaacacctcc
agcagggtcctgtctgcgtatgtggatgacaacagcactgtcctctatggcagttacctg
ggctactcggttggggccggccacttcctccaccctgactccacagagatcgttggcggt
gcgccccagcacgggcagactggtaaagcctacctattcagagctgaagaaaacatgctg
aagataatcagtgaagtcaagggcagcaagctgggctcgtattttggtgccagtgtgtgt
gccgtggacctgaatggagatggcctgtctgatctactggtaggatctcccatgtacagc
accgtgagagaggaaggacaagtccatgtctacatcaaccaaggagccgctaatatgaag
gaagcagagtttcagttggtgggaagcaactcgtatgctgccagatttggggagaccata
actgatctgggagatattgatgatgatggctttcctgatgtggcagtgggggctccgcag
gaggaagagctgcgtggggctatatatatctacaatgggaggaagacagggatctctcag
accttctctcaaaggatcaccagctctgttctgggtaatgagttaaagatgttcggccag
tctgtgtccggaggcatcgatgttgatggaaacggttaccaagatgtagcagtaggggcc
ttcctctcagactcggctgtggttctgaggactcgtccagtggtagtggtagaagccttc
atgcccctgcctgtcagtgtgaaccgctatgtagcgctgtgttctgacaacggtcttcct
gctgtctgcatcaatgctacagtctgcttcagggtccatgctcgactctttacctcttca
atagagctccagtataatctgacagcagacacgcaccacaaggagtccttcccctcgcgt
ttccatttccacggaaacgggacgtccaacgctacaacagggcgggtcaagatcagacat
gaccagctgacctgcgtcccccaccaggccttcatgaggaaagatgtccaagatatcttc
acgcccatccgttttgaggtgacgtacgccctcagagagcacactgtccataacggggga
tccacttttcctgctctgaaacccatactgcagcagagaggggaacacggtaacctggtg
gccaataagacaatgtttgctcggtactgttcattggccaactgctcaaccaatctgcag
gtctctgctcaactggtgttaccacagagacacaacaacatgccgtactttgcacttggc
aatgggaagaccatcatgttgaacacagccctggtgaacactggagatgatgcattcctc
cccagactccagctccgattccccagtaacctgcactacatcaaagtgcttgacacagag
gagaagtttgtgagctgtgacatttcagaggagaacaagacaatagtaggagtggattgc
agtgtgggaaacctgtacctcagctctggggccaaggtcaatatcagttttctgttggat
gtgaaccagagtagtagtgttggtgacgttagcatcttcatcaacgctagtggggacaat
tatgaaaacgaggatcttctgcacgacaactctgccactttgatgttaccactgagatat
ggagtagatgtcaacatccatgggtttatgactccaacatcctttgtatttggtgaccag
gagcctattccagttgattgctacacagaggcattcaattacacttacaaggttgtcaat
attggtccaagcaaatctctcaacacgatagtggagattgatattcccaagatcctatcg
ccatatccatacagattactccacatcacagacttccagacgtctcttggagaatgctcc
attaaaaacggctccattgcagtggaggatgactgtgaggtgccacagtcctctttcatc
aaagaactggtcttcttcttctccaaaaccagcaaacgcaaaatgttctgtgcccatggt
gacggcctgtgcctgactctcgagtgtagactaggagacatggatatcgggaaagaagcc
tccattcacatggaagtgaagctgaaccctaccgttctacagctctcacctggtcgtcat
ggagtgatgctgatggagagtactggcatcatcacatcaccaagggaggaccctcaaacc
atcctcctacagcagatccctatcgctcaggttgtgttggaggcccacttcagccagaag
cctcaggcagcagtggaggtgtttatcattgtagtgagtctactggtgggactcctgatc
ctgaccctgctcatcttcgccctctgggaggctggtttcttcaaaaggcagttcaagaag
gaggatgagatcagtaaggatagctgggactatgtacccaaaaatttgactaagactgag
agtagatcctaa

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