KEGG   Coregonus clupeaformis (lake whitefish): 121537048
Entry
121537048         CDS       T08357                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X2
  KO
K12828  splicing factor 3B subunit 1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121537048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121537048
   03036 Chromosome and associated proteins [BR:cclu03036]
    121537048
Spliceosome [BR:cclu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121537048
 Complex B
    121537048
 Complex C
   U2 SnRNP specific factors
    121537048
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    121537048
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 121537048
NCBI-ProteinID: XP_041700726
LinkDB
Position
23:complement(28838315..28854630)
AA seq 1327 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
TPGHTPGHTPSNSRWDETPGRNKGSETPGATPSTRMWDPTPSHTPAGAATPGRGDTPGHT
TPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSR
WDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNR
PLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQVN
DQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALR
QITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVV
IEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVAS
ALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDE
QQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLM
DAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKH
FWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMG
NLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVL
WRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMR
ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGL
RVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLR
YELEYFL
NT seq 3984 nt   +upstreamnt  +downstreamnt
atggcgaaaatcgccaaaacacacgaagacattgaggcccagatcctggagatccagggc
atgaaggctgccctggtggaggagggagcagatcagggtgtgggcctggactcaactgga
tactacgaccaggagatctatggtggcagtgacagccgctttgctggatatgtcacctct
atcgctgccaatgaacaggaggatgatgacgaggaggactcttcaacaagtctacttgga
cagaagaaaccggggtatcatgctccggtggctatactgaatgcaataccacagtcagat
gaacagtacgacccgtttgccgagcacaggcccgcgaagattgcagagcgtgaggacgag
tacaaggccagacgacgacagatgatcatctctccggagcgactagacccctttgcagat
gggggcaaaacgccggacccaaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaagacg
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgccgctgctgcc
gccaagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc
agcaatgccggcacacccaagaagatgtccagctgggaccaggctgaccaggctgctgag
accccaggacacacccctggccacaccccctccaacagccgctgggacgagacccctggc
aggaacaagggcagtgagaccccaggggccactcccagcacccggatgtgggaccccacc
cccagccacaccccggccggagcagccaccccaggcagaggggacacaccgggacacacc
acccccggacatgggggggccacaggcagcgtgcgcaaaaaccgctgggacgagaccccc
aagactgaaagggagacccctggtcatggtagtggttgggccgagaccccccgaacagac
agaggagacgagtcggtaggagagacccccacccccggggccagtaagaggaagtcccgt
tgggacgagacccctgccagccagatgggctcttccactccactgatgacccctgggaag
actcccatcggaacccctgccatgaatatggccactccatctccaggtcacctgatgagc
atgaccccagagcagctgcaggcgtggcgttgggagagggagatcgacgagagaaaccga
ccactcacagatgatgagctggatgccatgttcccagagggatacaaggtccttccccca
ccagcaggctacgtgcccatccgtaccccagcccgtaagctgtctgccaccccaaccccc
atggggggcatgacgggcttccacatgcagcaggaggaccgctccatgaagcaggtcaac
gaccagcccagtggaaacctgcccttcctcaaaccagacgacatccagtactttgataaa
ctgctggttgaggtggatgagtccactctgagcccagaggaacagaaggagcgtaagatc
atgaaactgctgctgaagatcaagaatggaacacctcccatgagaaaggctgccctgcgt
cagatcacagacaaggcgagggagtttggcgcagggcccctgttcaaccagatcctaccc
ctgctcatgtctcctactctggaggaccaggagcgccacctactggtcaaggtcatcgac
cgcatcctctacaagctggacgacctggtccgcccatatgtacacaagatcctggtggtg
attgagcccctgctgattgatgaagattactacgccagagtggagggcagagagatcatc
tctaacttggccaaggctgccggcctggcaactatgatctcgaccatgaggcctgatatt
gacaacatggatgagtacgtcagaaatacaacggccagagctttcgctgtcgtagcgtcc
gctctgggtatcccctccctgctgcccttcctcaaggctgtgtgtaagagcaagaagtca
tggcaggcccgccacacgggtatcaagattgtccagcagattgccatcctcatgggctgt
gcaatcctaccccatctgaggagtctggtggagatcatcgagcatggtctggtagatgag
cagcagaaggtgcggaccatcagtgccttggccatcgctgccctggctgaggctgccacg
ccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatcagacag
cacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctgatg
gatgctgagtatgctaactactacaccagagaggtcatgttgatcctcatcagagagttc
cagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgtggt
actgacggtgtggaggccaactacatcaagacagagatcctgccccccttcttcaagcac
ttctggcagcacaggatggccctggacagacgcaactacagacagctggtggacaccaca
gtagagctggccaacaaggtgggagcggcagagatcatctctcgtatagtagatgacctg
aaggatgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatgggg
aacctgggagctgctgacatcgaccacaagctggaggagcagctgattgacggcatactg
tacgccttccaggaacaaaccactgaggactctgtgatgctgaatgggtttggcacggtg
gtcaatgccctggggaagagggtaaagccctacctgcctcagatctgtggtacggtgctg
tggcgtctcaacaacaagtctgccaaggtccgccagcaggctgctgatctcatctctcgc
accgccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagttgtg
ttatacgagtacctaggagaggagtatcctgaagtactgggaagtatcctcggtgctctc
aaggccatcgtcaacgtcatcggcatgcataaaatgactccaccaatcaaagacctgctg
ccgcgcctgacgccaatcttaaagaacagacatgagaaggtgcaggagaactgtattgac
ctggttggcaggattgctgacaggggtgctgagtacgtgtcggccagggaatggatgcgt
atctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagccacc
gtcaacaccttcggatacatcgccaaggctatcggaccccatgacgtgctggccacacta
ctcaacaacctgaaggttcaggagcgtcagaacagagtgtgtaccaccgtagccatcgcc
atcgtggctgagacctgttctcccttcaccgtgctccccgcgctcatgaacgagtaccgc
gtgccagagctcaacgtgcaaaatggggtgctcaagtccctgtccttcctgtttgaatac
attggggagatgggcaaggactacatttacgctgtcacgccactgctggaggacgcactt
atggacagagacttggtccacagacagacagccagtgccgtggtgcagcacatgtccctg
ggcgtctacggctttggctgtgaagactctctcaaccacctgctcaactatgtgtggccc
aacgtgtttgagacgtcgccccacgttatccaggctgtgatgggggccctggaaggcctc
cgggtggccatcggcccctgccgcatgctgcagtattgcctacagggtctgttccaccca
gccaggaaggtgcgagacgtctactggaagatctacaactctatctacatcggctcccag
gatgctctgattgctcactacccacacgtctacaatgacgagaagaacccttacctccgc
tatgagctggagtacttcctgtga

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