KEGG   Coregonus clupeaformis (lake whitefish): 121537630
Entry
121537630         CDS       T08357                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018  RNA degradation
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121537630 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121537630 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121537630 (smx5)
   03041 Spliceosome [BR:cclu03041]
    121537630 (smx5)
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121537630 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     121537630 (smx5)
Spliceosome [BR:cclu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    121537630 (smx5)
 Complex C
  U2 snRNP components
    121537630 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 121537630
NCBI-ProteinID: XP_041701148
LinkDB
Position
11:complement(27888124..27895632)
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttctactcctttttcaagtccctggtggggaaggacgtggtggtggagctcaaa
aatgacttgagcatctgtgggacacttcactctgttgatcagtacctgaacattaaactg
acagacatcagcgtcactgatccagagaagtatccacatatgttatcagtgaagaactgt
ttcattcgaggctccgtggtgcgatacgtccagcttcctgcagatgaggttgacactcag
ctgctacaggatgctgcgcgcaaggaggctctgcaacagaagcagtga

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