Coregonus clupeaformis (lake whitefish): 121537727
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Entry
121537727 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor 12
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
cclu04625
C-type lectin receptor signaling pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121537727
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121537727
09153 Circulatory system
04270 Vascular smooth muscle contraction
121537727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121537727
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121537727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Sep15_SelM
Motif
Other DBs
NCBI-GeneID:
121537727
NCBI-ProteinID:
XP_045062920
LinkDB
All DBs
Position
24:3501085..3665916
Genome browser
AA seq
1503 aa
AA seq
DB search
MSSTQSTLTDRIPKKATRTPSILSKDHPPDKKPKSDKNTVPPVHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQILLSEGEGGDLGGLSSSLSSPHSLGTIGGTGERCSTSTSPQDHI
TSPLPLWKENNAVHNQKVDILQKMLTKEQQDLQAMKEEYSRNPTEKLLKDIQEAKKHIPL
LHGQLSKATGTPQDGSLSPWDSEVEEGGVGAADGEQTPSSLVESGSDGTWTNNTVSPSPL
PESPCQRETPCHSPKTTPRDSLNSCPSHDAEDTPDLNCNFQCSVGSPSSRLNPQIIGAED
DYFDTEHKEINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNS
KETRRIFIDFYTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPD
IQGNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVALERERSCAEHIISKIEDVLLTSQP
TEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEEKVKKP
RFPNILGPPRRPSRVDSTSISKAIEMNKQRGPQKQLSQPALSVPDHPESSAGSTRGSQSS
EPGLDVATHPSAFIATPPHSAPASQGSDPTGRDFDSGLTPSSALPRLSSDGLHSGDAQDR
MAHTTSTRFDFSPCTLDQLQEEERESDRVQDGGTPKPARRMEGLGCADVPSEDDLGNEIE
CEQDPPNWQTLVSREILAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDG
ILPPGDIKHIFTNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIK
RAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYP
LLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQ
SENPMISEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKC
HSKNLAGSADTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQR
TWQCLITQRADTMKTKPHNIIPLPQTDAERDTVEVISTGMPKLSKDPDRLSTESIQFAEK
CVTSSPGLQPTPTLINPFDSVKSDDKEEVSPPLLDRREEEEEEEEVEELDEEEVEVFMDG
ELADRLPFQGIAIDDQEPHDAFGMPPSRAEEALRTLAALRQVLLNHMTSREEGSDKDKEN
RKEKEQRKCRARGARLLRTTSLRDPEDNNTSTSGPRSAAASSPGSSENSTSERTESGREE
GAPGSSEIPSGDTGFFETSEDYGSYIVLGGLGESSTDDDGQASGEGGGGAQWGSDSGIDL
KKLLSSSSQTGDAGPNLRRQVMTHLRLLQANLQHLKEVETKYNELRQRLSETATDTEENK
DKS
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcacacagtcaacactcactgacaggattcccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacctaagagtgacaaaaacacagtg
ccacctgtgcatgagttcgaccctacagggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggctttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggcgctgccatgcgagcgggcgtccagacgggtgataggatcatcaaggtt
aacgggagcttagtaacacattcaaaccatgtagaagtcgtcaagttaataaaatcgggc
tcctatgttgccctcacggtgctggggaggcccccgggactagcccaaatcctcctgtcg
gagggcgagggtggagacctggggggcctgtcctcgtccctctcctcaccccactctctg
ggaacaatagggggaacaggggagcgctgctccacctccaccagcccccaggaccacatc
acctccccgctgcccctctggaaggagaataacgctgtacacaaccagaaggtggacatc
ttacagaagatgctgaccaaggagcagcaggacttacaggctatgaaggaggagtacagc
aggaaccccacagagaaactactgaaggacatccaggaggccaagaaacacattcctctg
ctgcatggccagctcagcaaggccacaggcacacctcaggatggctccctctccccctgg
gacagtgaggtggaggaggggggcgttggggcggccgatggagagcagaccccctcctcg
ctggtagagagcggcagcgatggaacctggaccaataacactgtgtctcccagtcccctc
cctgagagtccgtgccaaagagagaccccctgccacagcccaaagaccaccccccgagac
agcctcaactcctgcccctcgcatgacgccgaggacacgccggacttgaactgtaacttc
cagtgtagtgtgggcagtccctcgtctcgtctcaacccccagatcatcggagcagaggac
gactactttgatacagagcataaagagatcaacggtcagtgtagttgtttccagagtata
gagctgctcaagtctcggcccgctcacctggccgccttcctccatcacgtggtctctcag
tttgaccctgcgcctctgctgtgctatctttacgctgacctgtacaagcagaccaactcc
aaagagaccagacggatcttcattgatttctatactttcttcatggaccgagcagcgaat
ttgaaagtagctgtgcctgagtctattgcctctgaactagatcggcggagacctgagctg
atcccagaggagctgcacagacagtacacacagctgctacaggacacactgctaccagac
atccaggggaacctagaggacttcaggcagaagcgcagcatgggtctgaccctggcagag
ggggagctggctaagctggacacagagagggtgagagaccgcgtggcgctggagagagaa
cgctcctgtgccgaacacataatctccaagatagaggacgtgctgctgacgtcacagccc
acagaagaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacatctg
ggagttaaagtgaaggaaccgcgtagcctagagcccaaacgagtccgcatcaacttcctg
cccaagatcaagaagagcatcaaaactgagaaagagggggaggagaaggtgaagaagcct
cgttttccaaacatcctcggccctcctcgtcggcccagccgtgtggactcaacttcaatc
agcaaggccatagagatgaacaagcagcggggcccccagaagcagctctcccagcctgcc
ctaagcgtccccgatcacccagaatcctcagcgggcagcacccgcggcagccaatccagc
gaaccaggcttggatgtggccacccacccctctgccttcatcgcaacacccccccacagt
gccccagccagccagggctccgaccccacaggacgcgattttgactcgggtctcactccc
tcctctgccctgcccagactgagctctgacgggctccactcgggcgacgcccaggacagg
atggcccacaccaccagcacacgctttgacttcagcccctgcaccctggaccaattgcag
gaggaggagcgcgagagtgacagggttcaagatggaggcacccccaaaccagcccggagg
atggagggtttaggctgtgcagatgtgccgagtgaggacgacctggggaatgagatcgag
tgcgagcaggaccctcccaactggcagacgctggtcagccgagagatcctggcaggcctg
acgccacaggagatcaagagacaggaagtcatcaacgagctgttctacacggagcgagcc
cacctgaggatgttgaaggtgctggataacgtgttctaccagaaactaacccgagacggc
atcctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccagcta
catgtgtcgataacagaacaggtgacagtcattcggaagaagaacgagacgtcagtgata
gacctgataggagacgatctactagcttggttcagtgatggcgaggaggagaagatcaag
cgggcggtgggcacgttctgcagtaaccagcccttcgctctggaactcatcaagacccgg
cagaagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgt
cgcagactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatcca
ctactgctggagagcattgccaagtacacagaggatgcagaggagagggacaaggtgaag
agggccggagagtgctgcaggacgattctcaactatgtcaaccagacagtgaaagaggca
gagaacaaacagaggttagaggactaccagagacgcctggacctgtcctcactcaaacag
agtgagaacccaatgatctcagagttcaagagcctggacctgaccaagaggaagatggtg
cacgagggacctctctcctggaaggtcaacaaagacaagacaatcgagctgtacacactg
ctcctagaggacatcctggtgctgctgcagaagcaggacgagcggttggttctaaagtgc
cacagcaagaacctggcgggctccgccgacaccaagcacatctttagccccatcatcaag
ctcaacactgtgctggtgcgctcggtggccaccgacaacaagtccttcttcgtgctgtct
atgtccgacaacggagcccagatctacgagctaatggcccagaccgtgtccgagcaaaga
acgtggcagtgtctgataacgcagagggcagacaccatgaagacgaaaccgcacaacata
atacctttacctcagaccgatgctgagcgagacacagtggaggttatcagcacggggatg
cccaaactgagcaaagacccagaccgcctctccacggaaagtatccagttcgcagaaaaa
tgtgtaacttcctcgcctggtctgcaacccacgcccacattgatcaacccatttgacagc
gtcaaatcagacgacaaggaagaagtgtcgccgccgctgttagacagaagagaagaagag
gaggaggaggaggaagtggaggagttagacgaggaggaagttgaagtgtttatggatggc
gagctggcagacagactgcccttccaaggcattgccatcgacgaccaggagccccatgac
gcctttggcatgcccccctccagagccgaggaggccctaagaaccttggcagccctgagg
caggtccttctcaaccacatgacgagcagagaggagggcagcgacaaggacaaagagaat
aggaaggagaaggagcagaggaagtgccgggcccgtggggcacgcctgctgaggaccacg
tcactgagggacccagaggacaacaacaccagtacatcgggccctaggagtgcagcagca
tcctctcctggctcctctgagaacagcacatcggagaggaccgagtcggggagggaggag
ggggccccagggtcctcggaaatcccgtctggggacacaggcttcttcgagacatctgag
gactacggcagttacattgtcctggggggcttgggggagagcagcacagacgacgacggt
caggcgagtggcgagggtgggggcggggcccagtggggctcggactcgggcatcgacctg
aagaagctgctctcctcatcctcgcagacaggggatgccggccccaacctcaggcgccag
gtcatgacccacctccgcctgctgcaggccaacctgcagcacctgaaggaagtggaaacc
aagtataatgaactgcgccaaaggctgagtgaaacagctactgacacagaggagaacaaa
gataagagttag
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