Coregonus clupeaformis (lake whitefish): 121537853
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Entry
121537853 CDS
T08357
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121537853 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121537853 (scn8aa)
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121537853 (scn8aa)
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
ATP-synt_B
HB_ELP1
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
121537853
NCBI-ProteinID:
XP_041701393
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Position
24:53593931..53730262
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AA seq
1974 aa
AA seq
DB search
MAAPLMAPPGPNSFKYFTTESLANIELRINEEKNKPPPKQDSSHRDDDDDNKPKPNGDLE
SGRNLPFIYGDIPPGMVATPLEDLDPFYQAQKTFIVLNRGKTIFRFSANPALYIISPFNI
FRRIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFECLVKIVAR
GFCIDGFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPINSTENYLANGSKGF
DWNEYINNDTNFYFLPGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAF
LALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TMEEAEQKEAEFKAMLEQIKNQQEAAQEAAQANAMATSAGTVSEDVGDDDGRGNLSCSSS
EMSKLSSKSAKERRNRKKKWRQKEQSQREEKGDCEKFIKSESDDGSKRSRFHFPDNRLGR
KSSIMNQSLLSIPGSPFLSRHNSKSSIFSFKGRGKDVVSENEFADDEHSTVEECEERRGS
RFSPYRRSSYTGYHHGGGKRNSTVDCNGVVSLISPGTGGRLLPEVKIDKATGDDSPTTEV
EVKKKLSGSLMVSVDQLNTSFGRKERANSVMSAITNTLAEELEESQRSCPPCWYKFSNIF
LIWECCPIWLKIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPHFEEVLSVGNL
VFTGIFAVEMFAKLVAMDPYYYFQEGWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLALIVFIFAVVGMQLFGKNYKDCVCKIAL
DCKLPRWHMHDFFHSFLMVFRVLCGEWIETMWHCMEVADQGMCLIVFMMVMVIGNLVVLN
LFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWFKIKLAELVLSLTKKPQVED
EQKPLDDMYDKKLNCIANHSGVDINRDLDYTKNGNGTTSGIGNSIGRYLIDEDHMSFIHN
PNLTVCVPIAVGESDFENLNTEDFSSESENENSKEGLDDTSSSEGSTIDIKPDVEAEAVV
VEAVEEYLDPENCWTPECIIKYPCCDVPITHGWGKYWWFLRKTCYLIVEHNWFETVIIFM
ILLSSGALAFEDVYIQQRKTIRTVLEYADSVFTYIFILEMLLKWVAYGFHKYFTNAWCWL
DFFIVDVSIISLVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNQTAEEYFHASEVNNKTQCMALIGQNFTEV
RWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAIDSRRVEDQPIYEDNIYMYIYFVIF
IIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP
QNKIQGLVFDFVTQQVFDISIMMLICLNMVTMMVETDDQSEETENILYWVNFIFIVAFTT
EFVLKLFALRHYYFTNGWNVFDTVVVILSIAGMFLADIIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHEAGIDDMYN
FETFGNSMICLFMITTSAGWDGLLLPILNYPPDCDPTLENPGAPATGDCGNPSVGIFFFV
MYIIISFLVVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPAASQFITFAK
LGDFADTLEHPLRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRT
QMEERFVQANPSKVSYEPITTTLRRRQEDVSARCIQKAYRAHLLKRGFVCKRRPMTKLEN
GGTNNLEKKESTPSTASLPSYDSVTKPDKEKQEENEAERKEKDRNQKEERESKC
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacctcttatggcaccaccaggacctaacagcttcaaatattttaccacggaa
tcattggctaacatcgagctccgtatcaacgaggagaagaacaaaccgccgcccaaacag
gacagcagtcaccgtgacgacgacgatgacaacaaacccaagcccaacggcgacctggag
tctgggcggaatctgcccttcatctacggcgacatccctcctggaatggtggcgacacca
ctggaggatctggaccccttctaccaggctcagaaaacattcatagtgctaaatagaggg
aagacaatcttccgctttagtgccaaccctgccttgtacatcataagtccttttaatatt
ttcaggcgaatagctataaaaattttgatacattctcttttcagcatgatcattatgtgt
actattttgaccaactgtatattcatgacttttagtgatcctccggagtggtccaagcaa
gtagagtacacattcacagggatttatacgtttgaatgtcttgtaaaaatcgtcgctcga
ggattctgtatagatgggtttacattcctaagggatccctggaactggctggatttcatg
gtcatttctatggcatatataacagagtttgtggacctgggcaatgtctctgcgctgaga
acattcagagttctccgagcattgaaaactatctctgtcataccaggtctgaagaccatt
gtcggtgctctaatccaatcggtgaagaaattgtcagacgttatgatcctcacggtcttc
tgtctcagtgtctttgctctgattggactacagctcttcatgggcaacctacgacaaaaa
tgcgtgatttggccaatcaactccaccgagaactacttggccaacggcagcaaaggcttc
gactggaatgaatacatcaataacgacaccaatttctacttcctgcctggacaattggat
gcccttttatgtggcaacagctcagattctggccgctgccctgaaggctacacatgcatg
aaagctgggaggaatccaaactacggctacaccagcttcgacagcttcggatgggctttc
ctggctctcttcagactcatgacacaggacttctgggagaacctctacatgctgaccctg
cgggcagcagggaagacctacatgatcttctttgtgctggtgatcttcgtggggtccttc
tacctggtcaatctgatcctcgctgtggtggccatggcctatgaggagcagaaccaggcc
acaatggaggaggctgagcagaaagaggcggagttcaaggccatgctggagcagatcaag
aaccagcaggaggctgcacaggaggccgcacaggccaatgccatggcgacgtcggcgggc
acggtgtcggaggacgtaggggatgacgacggcagggggaacctgtcctgtagctcgtca
gagatgtccaagctcagctccaagagcgccaaggagcggcgcaaccgcaagaagaagtgg
cgccagaaagagcagtcgcagcgggaggagaagggggactgcgagaaattcatcaagtcc
gagtcggacgacggcagcaagaggagccgcttccatttccctgacaaccggctaggccgc
aagtcttccatcatgaaccagtccctcctcagtatccccggctcaccgtttctgtcgagg
cacaacagcaagagcagcatcttcagcttcaagggccgcggcaaagacgtggtctcagaa
aatgagtttgccgacgacgagcacagcacagtggaagagtgcgaagagagacggggctcc
cggttcagcccgtaccggcggagcagctacacgggctaccaccacggcggcgggaagagg
aactcgacggtggactgcaacggcgtggtgtctctgatcagtccggggaccggcggacgc
cttctgcctgaggtgaaaatagataaggcaactggtgacgacagtcccactactgaggtt
gaggtgaagaagaagctgtctggttccctgatggtgtctgtggaccagctcaatacctcc
ttcggaaggaaagagcgggccaacagtgtcatgagcgccatcaccaacactctagcggag
gaactggaggagtctcagcgtagttgtccaccgtgctggtataagttctccaacatcttc
ctcatctgggagtgttgtcccatctggttgaaaatcaaagagatcgtcaacctgatcgtc
atggaccccttcgtggacctggccatcaccatctgtatcgtcctcaacaccctcttcatg
gcaatggagcactaccccatgaccccgcactttgaggaggtgctgtccgtgggaaacctg
gtgttcacagggatatttgctgtggagatgtttgccaagctggttgccatggatccctac
tactacttccaagaggggtggaactgcttcgacggcttcattgtgaccctgtccttagtg
gagctggcattggctgacgtggaggggctgtccgtgctcagatcattccgattgctgaga
gtgtttaaactggccaagtcgtggcccacactcaacatgctgatcaagattatcggtaac
tctgtgggcgccctgggaaacctgaccctcgtcttagctctcatcgtcttcatatttgcc
gtggtcggcatgcagctgttcggcaagaactacaaggactgtgtgtgtaagatcgccctg
gactgtaagctgccccgctggcacatgcacgacttcttccactcattcctgatggtgttc
cgggtgctgtgtggggagtggatcgagaccatgtggcactgcatggaggtggctgaccag
ggcatgtgtctcatcgtcttcatgatggtcatggtcatcgggaacttggtggtgttgaat
cttttccttgccttgctgctgtcctcgttcagcgcagacaacttagccgcaacagacgac
gacggagagatgaacaaccttcagatctccgtcatccgtatcaagaaggggatcgcctgg
ttcaagatcaagttggcagagttggtgctcagcttgaccaagaaaccacaggtggaggat
gaacagaaacctttagacgacatgtacgacaagaaactgaactgtatcgccaaccacagc
ggtgtggatatcaaccgcgacctggactacaccaagaatggtaacggcaccactagtggt
atagggaacagcatcgggaggtacttgatcgacgaggaccacatgtcattcatccacaac
cctaacctgaccgtgtgcgttcccatcgcggtcggagagtccgactttgagaacctcaac
accgaggacttcagtagtgagtcggagaacgagaacagcaaagaggggctggacgacacc
agctcatcggagggcagcaccatagacatcaagcctgacgtggaggcggaggcggtggtg
gtggaggctgtggaagagtacctagacccagaaaactgttggacacctgagtgtattatc
aagtatccttgctgcgacgtgcccatcactcacgggtggggaaaatattggtggttcctg
agaaagacatgctatcttattgtggagcataactggttcgaaaccgtcattatctttatg
atcctactcagtagtggggccctggcttttgaggatgtgtacatccagcagaggaagacc
atcaggaccgtcttggaatacgcagacagtgtgttcacatatatcttcatcctagagatg
ttgctcaagtgggtcgcctacggattccacaagtacttcaccaacgcctggtgctggctc
gacttcttcatcgtcgatgtgtctataatcagtctggtagctaatgcactgggctactcg
gatctaggtcctattaaatcactaaggacactaagggccttgagacccctcagagccttg
tcacgttttgaagggatgagggtggtagtcaacgccctggtgggagccatcccctccatt
atgaatgtgttgctggtttgcctcatcttttggctgattttcagtatcatgggagtcaac
ttgtttgcgggcaagtactactactgtttcaaccagacagcagaggagtactttcatgcc
agcgaggtcaacaacaagacacagtgcatggccctcattggacagaatttcactgaggtc
aggtggaagaatgtcaagatcaactttgacaatgttggcgccggatacctggctctgctt
caagtggcgacattcaaaggctggatggacatcatgtacgcagccatagactccagaagg
gtggaggaccagcccatctatgaagacaacatctacatgtacatctacttcgtcatcttc
atcatctttggctccttcttcaccctcaacctcttcatcggtgtcatcattgacaacttc
aaccaacagaagaaaaagtttggaggtcaggacatcttcatgacagaggaacagaagaag
tactacaacgccatgaagaaactgggttcaaagaagccccagaaacccattcccagacca
cagaacaagatccaagggttggtgtttgactttgtgacccagcaagtctttgacatctcc
attatgatgctgatctgcctcaacatggtcaccatgatggtggagacagacgaccagtcg
gaggagacggagaacatcctctattgggttaacttcatcttcatcgtggcgttcaccacc
gagttcgtcctgaaactcttcgccctgcgccactactacttcaccaatggctggaacgtg
ttcgacacggttgtggtcatcctgtccattgcgggcatgttcctggctgacatcattgag
aagtacttcgtatcgccgaccctcttcagggtcatccgattggctcgaatcggccgcatc
ctgcgtctgatcaaaggggccaagggcatacggactttactcttcgccttgatgatgtca
cttcctgccctgttcaacatcggcctcctgctcttcctggtgatgttcatcttcagcatc
ttcggaatgtccaacttcggctatgtcaaacacgaggccgggatagacgacatgtataac
tttgagaccttcgggaacagcatgatctgcttgttcatgatcaccacgtctgcaggctgg
gatggtctcttgctccccatcctcaactaccctcctgactgcgacccaaccctggagaac
ccaggtgcacctgcgacaggcgactgcggaaacccctcagttggcatatttttctttgtc
atgtatatcattatttccttccttgtcgtagtcaatatgtacatcgccatcatcttagag
aacttcagtgtagcgacagaagagagcgctgacccgctcagtgaagacgactttgagacc
ttctatgaaatctgggagaaattcgaccccgccgcttcccagttcatcaccttcgcaaaa
ctgggtgacttcgccgacaccctggagcaccctctccgcgttcccaaacccaacaccatt
gagctgatcgccatggacatgcccatggtcagcggcgaccgcatccactgcctggacatc
ctgtttgccttcaccaaacgcgtgctgggtgacagcggggagctggacatgctacgcacg
cagatggaggagcgcttcgtgcaggctaacccctccaaggtctcctacgagcccatcacc
acgacgctgcgccggcgccaggaggacgtgtccgcacgctgcatccagaaagcctaccgc
gctcacctcctcaaacggggcttcgtctgcaagcgcaggcccatgaccaagctggagaac
ggagggaccaacaacctggagaagaaagagagcacaccctccaccgcctctctcccctcc
tacgacagcgtgaccaaacctgacaaggagaaacaggaggagaatgaggcagagaggaaa
gagaaggacagaaaccaaaaagaggagcgggaatcaaagtgttag
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