KEGG   Coregonus clupeaformis (lake whitefish): 121537924
Entry
121537924         CDS       T08357                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1 isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121537924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121537924
   03041 Spliceosome [BR:cclu03041]
    121537924
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     121537924
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121537924
Spliceosome [BR:cclu03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    121537924
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2
Other DBs
NCBI-GeneID: 121537924
NCBI-ProteinID: XP_041701514
LinkDB
Position
24:18227682..18233128
AA seq 405 aa
MSKEAPREPEQLRKLFIGGLSFETTDESLRAHFEQWGSLTDCVVMRDPANKRSRGFGFVT
YAGVNEVDAAMEARPHKVDGRLVEPKRAVSREDSSRPGAHVTVKKIFVGGIKEDTEDSHL
RDYFEQFGKIEVIDIMTDRNSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKAL
SRQEMQTTGMGMRGGRGGGGGNYGRGGGYGGNDFGRDDGYFGGRGDADSSVSGGRGGGYG
GGDGGYNNGYGGGDGGYGGGPGGYGGGNRGYGGGQGGYGGGQGGGYGGGNGYNDYNNGNG
NSGNFGGGKSMASPQEAAPVAGNFGGGGGNGGGNGYNDFGSYNNQASNYGPMKGNNFGGS
GGGGSGGSGGSGGGRNSGPYGGGYGGSSGGGGGGGYGGGSGGRRF
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgtcgaaggaggccccacgtgaacccgagcagctccgcaagctgttcatcggaggtctg
agcttcgaaaccacggacgagagtttgcgagcacacttcgaacaatggggatctcttaca
gattgtgtggtaatgagagatcctgcgaacaagcgctccaggggttttgggtttgtcact
tatgctggtgtgaacgaggtagatgctgccatggaagcacgaccccacaaggttgatggt
aggctcgtagagccgaagagggcagtgtccagagaggactccagccgtccaggtgctcac
gtcacagtgaaaaaaatatttgttggcggtatcaaggaagacacagaagactcccacctg
cgagactactttgagcagtttggcaagattgaagtaatcgacattatgaccgaccgcaac
agtggcaagaagaggggcttcgcctttgtcacgtttgatgaccacgatgcagtggacagg
attgttatccagaagtaccacacactgaatggtcacaattgcgaagtgaggaaagcgttg
tccagacaggagatgcagactacaggaatgggtatgaggggtggccgtggtggtggcggt
ggcaactatggcagaggtgggggatacggaggtaatgattttggccgtgatgatggatac
ttcggtggccgtggtgacgctgactcgtctgtttcaggaggcagagggggtggatatggc
ggtggagatggtggttacaacaatggttatggaggaggagatggtggctatggtggaggg
ccaggtgggtatggtggcggtaaccgtggctacggcggaggacaaggaggttatggcgga
ggacagggtggcggctatggtggcggaaacggttataacgactacaacaatggcaatggc
aacagcgggaactttggcggcggtaagtccatggcttcaccacaagaagcagcaccagtt
gctggaaactttggaggcggtggcggcaacggtggcggcaacggctacaatgactttggc
agctacaacaaccaggcttccaactatggccccatgaagggtaacaacttcggtggcagc
ggcggtggcggcagtggtggaagtggcggtagcggcggtggcaggaacagcggcccatat
ggtggcggttatggaggtagctcaggtgggggtggcggcggtggatatggcgggggctcc
ggtggacgacgattctaa

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