Coregonus clupeaformis (lake whitefish): 121537991
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Entry
121537991 CDS
T08357
Symbol
ddx19a
Name
(RefSeq) ATP-dependent RNA helicase DDX19A isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121537991 (ddx19a)
03015 mRNA surveillance pathway
121537991 (ddx19a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121537991 (ddx19a)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121537991 (ddx19a)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121537991 (ddx19a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4476
Motif
Other DBs
NCBI-GeneID:
121537991
NCBI-ProteinID:
XP_041701627
LinkDB
All DBs
Position
24:14132706..14139765
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AA seq
492 aa
AA seq
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MATDSWALAVDKQEATTDSFGSLVIRSPPRGIGDAATRKAKGTTKQVENGTNVEVEEKED
KAAQSLLNKMIHTSLVNTTNQVEVLQRDPNSPLYSVKTFEELRLKDELLRGVYDMGFNRP
SKIQENALPMMLAEPMYYPSGSRPQNLIAQSQSGTGKTAAFALAMLSHVDPANKWTQCLC
IAPTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRGMKLQEQIVIGTPGTVLDWCSK
LKIIDPKKISIFVLDEADVMIATQGHQDQSIRIQRMLPNECQMLLFSATFEDSVWKFAER
VVPDPNIIKLKREEETLDTIKQYYVLCNDKEEKFTALCNIYGAITIAQAMIFCHTRRTAG
WLSAELTKEGHVVALLSGEMTVEQRAAIIERFREGKEKVLVTTNLCSRGIDVEQVSVVIN
FDLPMDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKHSMNILNQIEEHFNKKINKLD
TDDLDEIEKIGN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcctgggctctggctgtcgataaacaggaagctacgactgactctttc
ggctccttggtgatcagatccccacctcgaggtataggtgatgctgcaactagaaaggca
aaaggtaccacaaaacaagtggagaatggcacaaatgtggaagtggaagaaaaagaggac
aaagcggcccagtcgttgttaaataagatgatccacaccagccttgtgaacactaccaat
caagtagaggttcttcaaagggatcccaactctcctctttactctgtcaagacatttgaa
gagctgagactgaaagatgagctgctaagaggagtgtatgacatgggttttaacagaccc
tctaagatccaggagaatgccctgcccatgatgctggcagagcccatgtattatccctct
ggttccagacctcagaacctgattgcccaatcacagtccggcacaggtaaaacagctgcc
tttgcgctggccatgctcagccatgttgacccagctaacaaatggactcagtgtctttgc
attgccccaacgtacgagctagctttgcagactggtaaagtcattgaacagatggggaaa
ttctatcctgaggtcaaattggcatatgccattcgtggcaataaattggatcgagggatg
aagcttcaggagcagattgtcatcgggacacctggcacggtcctagactggtgctccaaa
ctgaagatcatcgaccccaagaagatcagcatcttcgtcctggacgaggctgacgtcatg
atcgccacacaaggtcaccaggaccagagcatccggatccaaagaatgttgccaaatgaa
tgtcagatgctgctgttctcggccacgtttgaggactcagtctggaagtttgcagagagg
gtcgtgccagaccccaacatcatcaagctgaaacgtgaagaggagactctggacaccatc
aagcagtattacgtgctctgcaatgataaggaggagaagttcacagccctctgtaatatc
tacggcgccattaccatcgcccaggccatgatcttctgtcacacccgaaggacagctggc
tggctgtctgctgagctgaccaaagaaggccatgtggtggcactgctgagtggggagatg
actgttgagcagagagcggccatcattgaacgcttcagggagggcaaggagaaagtcctg
gtgaccaccaacttatgctccagaggtattgatgttgagcaagtttccgtggtgatcaac
tttgacctgcccatggacaaagacggaaacgctgacaacgagacataccttcaccggatt
ggccgcacaggacgtttcggcaagagggggcttgccgtcaatatgattgacagcaaacac
agcatgaacattctcaaccaaatcgaggagcatttcaataaaaagataaacaaacttgac
actgacgatctggatgaaatcgagaaaatcggcaactga
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