Coregonus clupeaformis (lake whitefish): 121538016 Help Entry 121538016         CDS       T08357                                  Name (RefSeq) integrin alpha-5-like   KO K06484   integrin alpha 5 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu03266   Virion - Herpesvirus cclu04145   Phagosome cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04810   Regulation of actin cytoskeleton cclu04820   Cytoskeleton in muscle cells cclu05100   Bacterial invasion of epithelial cells cclu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03266 Virion - Herpesvirus     121538016  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121538016  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121538016   09144 Cellular community - eukaryotes    04510 Focal adhesion     121538016   09142 Cell motility    04820 Cytoskeleton in muscle cells     121538016    04810 Regulation of actin cytoskeleton     121538016  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     121538016   09171 Infectious disease: bacterial    05100 Bacterial invasion of epithelial cells     121538016  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:cclu04147]     121538016    04515 Cell adhesion molecules [BR:cclu04515]     121538016    04090 CD molecules [BR:cclu04090]     121538016 Exosome [BR:cclu04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    121538016 Cell adhesion molecules [BR:cclu04515]  Integrins   Integrin alpha subunits    121538016 CD molecules [BR:cclu04090]  Proteins   121538016 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Integrin_A_Ig_3 Integrin_A_Ig_2 Integrin_A_Ig_1 FG-GAP FG-GAP_3 Integrin_alpha DUF11 Tudor_3 Motif Other DBs NCBI-GeneID:  121538016 NCBI-ProteinID:  XP_041701682 LinkDB All DBs Position 24:11931088..11995351 Genome browser AA seq 1054 aa AA seqDB search MCSNRYRSKIPGKVNYPLFCIGVCLIILLRLCAAFNLDVENPAVYSGPNGSYFGYSVEFY LTNSSSISVVIGAPKANTSQLNITEGGSVYYCPWSLGQSECHNIEFDNQGDRKVTLNDID YQAEVKSHQWFGATVRSHGDTILACAPLYSWRTKKDMPQSDATGTCYLSVKNFTKFVEYA PCRTEFINEGGQGYCQGGFSADFTKDGKVVLGGPGSFFWQGQVISAAKEEIIKAYYPGYF MQSVEGQTQTRQAQIKYDDSYHGYSVAVGEFSGDDVEDVVAGVPKGVMLYGLVSILNATD LKSMLNYTGEQMGSYFGYTVATADINNDGMSDLLVGAPMYMTRGSDSRLEEVGRVYLYLQ RRPLDLEPTLNLTGTQVFGRFGSTIAPLGDLNQDGYNDVAISCPFGGEDQQGLVLIYNGF AGGLRDMPSQVIAGQWASGTVPASFGFALRGAKDLDMNGYPDLIVGAFGVDKAILYRSRP IVSTSASLTVYPTMINPEEKSCSVNNGNTTIPVSCVNLSFCLSANGKYLPDNLDFQVEVQ LDRLKHKQMGAVKRALFVDSQQAVLQRSVRVKNGEHVCYDTKIYLRDDKEFRDKLSSIYI SLNFSLDPQAAFDSHGLRPILNYQTTELIEQKAQILLDCGEDNICVPDLKLAVHGDRKEV YLGDDNSLTLTFNARNEGEGGAYEAELYVVLPPEADYSGIARNNESLTQLTCSYETENQT RYLSCDLGNPMKSGTSLWAGLRFTVPRLKDTHKTVQFELQIRSKNENNSHSEVVPYKLEV VVQADVILQGVSRPDKVFFPPPNWKVSKTPQEEQDIGPEVQHIYELVNKGPSGISHTVLQ LSCPLSVQGKGLLYPLEISTEGPLNCTTNHSINYLQLKLQQSSTEQPPLLVPGQDHHIER REVPRDQLAEHTNLSCSNVECWTLQCDVGLLEKGTSAILKVRARIWAETFIERAYKGYVL ECLAMFSVVKMPYAILPKEVPSGFKKVVTPVVWNKPDSQYSAPLWIIILAILAGLLLLAL LIYVLYKLGFFKRSLPYRMAMEKAQLKPQAASEA NT seq 3165 nt NT seq  +upstreamnt  +downstreamnt atgtgttccaatagataccgttcgaagataccgggaaaagttaactacccattattctgc attggggtttgtctaataattctgctacggttgtgtgctgcattcaacttggatgtggag aaccccgctgtctacagcggacctaatgggagctactttggatattccgtggaattttac ttgaccaattcttcaagcatcagtgtggtgattggcgctcccaaggccaataccagccag ctcaacatcacagagggcgggtccgtgtactactgcccatggagtctcggccaatctgag tgccacaacattgaatttgacaatcaaggggaccgcaaagtcactctcaatgacatagac taccaggctgaagtcaagtcccaccagtggttcggcgccaccgtccgttcccacggagac accattctggcctgcgcccccctctactcctggagaaccaaaaaagacatgccccagtca gatgccacgggaacctgctacctctctgtcaagaacttcaccaagtttgtggaatatgct ccctgtcgcacagaattcattaacgagggtggtcagggctactgtcaggggggattcagt gctgatttcaccaaggatgggaaagtggtacttggaggaccaggcagcttcttctggcaa ggtcaggtgatctcagcagccaaagaggagataatcaaggcttactacccagggtacttc atgcagtctgtggagggacagacccagaccagacaggctcagatcaaatatgacgacagc taccacggttactctgttgcggttggggaattcagtggagatgacgtggaagatgttgtg gctggggtcccaaaaggggtcatgctctatggtttggtgtctattttaaatgccactgat ctgaagtccatgctcaactacactggcgaacagatgggctcctattttgggtatactgtg gccactgccgacatcaataacgacggcatgtctgacctgttggtgggagctcccatgtac atgacccgagggtcagacagccgcctggaggaggtgggccgtgtgtacctctatctgcag cgtcgtcccctggacctggagccaactctcaacctgaccgggacacaggtgttcgggagg tttggcagcaccatcgcacctctgggagacctcaaccaggacggatacaatgatgtggcc atcagctgtccgttcggtggagaggaccagcagggattggttctcatctacaacggattc gccggtgggctcagggacatgccctctcaggtcatagctggccaatgggcttcaggtaca gtgcccgccagctttggattcgcactccgaggggctaaggatctggacatgaatggctac ccagatcttattgttggtgcttttggagttgacaaggcaattttgtacagatcccggccc atcgtcagcaccagtgcctccctgaccgtctaccccacaatgatcaaccctgaggagaag agttgttcagtcaataacggcaacaccaccatacctgtctcctgtgtcaacctgagtttc tgcctctctgccaatgggaagtacctaccagacaacctagacttccaggtagaggtgcag ttggaccgtctgaaacacaagcagatgggagcggtgaagagggctctgtttgtggactcc cagcaggcagtgcttcagaggagtgtgagagtgaagaacggagagcatgtgtgttacgac accaagatctacctgagggatgacaaggagttcagagataagctctcctccatctacatc tccctcaacttcagcctggatcctcaggcagcgtttgactcccacggcctcagacccatc cttaactaccagaccactgagctcatcgagcagaaggcccagattctgctggactgtgga gaagacaacatctgtgttcctgacttaaagctggcagtgcacggggacaggaaggaagtg tacctaggtgacgacaactcactgaccttgactttcaacgcacggaacgagggtgaaggt ggggcctacgaggctgaactgtatgtggtgctgcctcctgaagcagactacagcggtata gcccgcaataacgagagcctgacccagctgacctgtagctacgagactgagaaccagacc cgctacctcagctgtgacctgggcaaccccatgaagtctggcaccagcctgtgggcaggc ctgcgcttcactgtgccacgactgaaggacacacacaagacggttcagtttgagctacag atccgcagtaaaaatgagaataattcccacagtgaggtggtgccctacaagctggaggtg gttgtccaggccgatgttattttacaaggtgtctcccgaccagacaaggtcttcttccct ccccccaactggaaggtctccaagaccccccaggaggagcaggacattgggcctgaagtc caacacatctatgagctggtgaacaaaggtcccagtggtatcagtcacacagtgctgcag ctcagctgtcctctcagtgttcagggcaagggtctcctctaccccctggagatctctact gagggacccctcaactgcaccaccaaccactccatcaactacctgcagctcaagctccag cagtcttccacagagcagccacccctacttgtgcctggtcaggatcaccacatcgagagg agagaagtcccgagagaccagctggcggagcacactaacctgtcctgctctaacgtggag tgctggacgctgcagtgtgacgtgggtcttctggagaaggggaccagcgccatcctcaaa gtgcgcgcccgcatctgggctgagaccttcatcgagagggcatacaaggggtacgtgctg gagtgcctggcaatgttcagcgtggtcaagatgccatatgccatcttgcccaaggaggta cctagtggatttaaaaaggtggtgaccccggtggtgtggaacaagccagacagccaatac tctgcccccctgtggatcatcattctggccatactggctgggcttctgctgctggcactg ctcatctacgtcctgtacaaacttggcttcttcaaaaggtcgctaccctatcgcatggct atggagaaggcccaactcaagccccaggctgcatctgaggcctaa

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