Coregonus clupeaformis (lake whitefish): 121538038
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Entry
121538038 CDS
T08357
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121538038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121538038
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121538038
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121538038
mRNA degradation factors
3'-5' decay
Pan complex
121538038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
121538038
NCBI-ProteinID:
XP_041701711
LinkDB
All DBs
Position
24:complement(11369649..11385751)
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AA seq
1203 aa
AA seq
DB search
MMNFDGLDPGMGEYAPALHGSLEAGMEPSMDPRLNPGLLQGVELNPDGLNVAVPEHMMEG
MFSELHSVHAEVGVPVTATHFDLQEELLWMGNHRGHGMSFFGPTMGRYSSFQAHSTDDIR
QIQSMETGVLFLSKSNLKCQTRGGLVMFDYPMEEGADMHSLLMTENNTMLMGGLQNYVLE
FDLNTVQQTQKFTVEAPGVAIMRQSNRFLFCGNTSGKVSLCDLRTFKLEHEFDAFSGSLS
DFDVHGNLLAACGFSSRGMNGLACDRFLMVFDLRMMRAVTPLQVHVDPLFLRFIPTYTSR
LAIISQTGQCQFCEPTGLANLADVFHVNTVGQLLMSFDVSSSKQALAFGDSGGGVHLWSD
APEVSYNGYSRETEFALPCLVDSLPQLDWSHDLLPLSLIPMPFNSSEPLLSDWVTTQATP
SPRRAPLVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKEVELDYDNYNQGVPESPIG
RDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLYF
LEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLIL
ADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSALGSSGESVIGRQF
GCEVENSSLCRCGKETVRSSLTLLFTMHYPEQNSLVKTIKEYDFAEILKKSICLEQSTQA
WCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKAQAEYAFIKAKKKEEMEPPK
PKEPPQPPEWCLEEELVNTEGLTFDTRVEDLRHVWIPLTLKMSISKSQGLEISSWPEAEE
LSSTEEAEGASLYDLVVTVPHVLDARTGGNLVAHIKVGETYHIRKEGVTHQQWYLFNDFL
IEPIDKAEAAQFDVNWKLPAILYYAKRNYHSKYDLRIKNPIEASVLLTEASLARKQRKSH
ATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQG
PNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGV
RFVGHGLQKDFRVINLLVLKDQVVDTVYLFHMPRKRMISLRFLAWYFLDLNIQGETHDSI
EDARTALALYRKYLELSRGGGNDEVRKVLKGLYEKGRKLDWKVPDCDTGDGQGSPKSTKL
ALH
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgatggtctggacccagggatgggtgaatacgcaccggccctccatggg
agtctagaggcaggtatggagccctcaatggacccacggctcaatccgggtttgttgcaa
ggtgtagagctcaatccagatggtcttaacgtggccgtacccgagcacatgatggagggg
atgttctctgaactccacagtgtgcatgcagaagtaggcgttcctgtcacagcaactcac
tttgacctgcaagaggagctgctctggatgggaaaccacagggggcatggaatgtccttc
tttggtccgacaatgggccgctactcttctttccaggcacactcaactgatgacattcgt
cagattcagagcatggagactggggttctgtttctctctaagagtaatctcaagtgccaa
actcgtggaggcctggtcatgttcgactacccaatggaggagggagctgacatgcatagt
ctgcttatgacagaaaacaacacaatgctcatgggtggactacagaactatgtgcttgaa
tttgaccttaatactgtgcagcagacacaaaagtttacagtcgaggctccaggggtagct
atcatgcggcagtccaatcgtttcttattctgtgggaacacatctgggaaggtgtccctt
tgtgacctgcgcacctttaagctagaacatgagtttgatgccttctccggtagcctgtca
gactttgatgtccatggcaacctcctggctgcgtgtgggttctccagtcgaggaatgaac
ggactagcgtgtgaccgcttcctcatggtgtttgacctgcgcatgatgcgcgctgtgaca
ccactccaggtgcatgtggaccctctcttcttgcgcttcatccctacgtacacatcccgc
ctggccatcatctcacagacaggacagtgtcagttctgtgaacccactgggctagccaac
ctggctgatgtcttccatgtcaacaccgtgggccagttgctcatgagcttcgacgtgtcc
tccagcaagcaggctttggcctttggggactctgggggaggtgtgcacctttggtcagac
gccccagaggtctcctacaacggttattcaagggagaccgaatttgctctgccctgtctg
gtggactccttgcctcagctggactggagccatgacctgttgcccttgtccctcatcccc
atgccctttaatagctcagagccactactgtcagactgggtcaccacacaggccactccc
agccctagacgagcacccctagtggacccagagatcctgcgcacgatgaagactgtaggg
ttcattggttacgcccccaatcctcgcacccgtccccggaaccaggttccttacaagatc
aaggaggtggagctggactatgacaactacaatcagggggttcctgagtctcctattggt
cgagatgaagaaccacacctctacatggtgcccaaaaaatacaggaaggtcaccattaaa
tactccaaacttgggctggaagactttgacttcaaacattacaacaggaccctgtttgct
ggcctggaacctcacattcccaatgcttactgtaactgcatgatccaggtgttgtatttc
ctggagccaatccgctgcctggtccagaaccacctgtgtcagaaggagttctgtctggcg
tgtgagctgggcttcctcttccacatgctggatctgtcacgaggagacccctgtcaggcc
agtaatttcctccgagctttccgaactatcccggaggcgtctgccctgggtctgatcctg
gctgactctgatgagcagacggggaaggccaggctgggccgtctcatccagagctggaac
cgtttcatcctcacccagctccaccaggagacgcaggagcaggaggggccacaggcctac
cgaggagccagcagcagtgctctgggctcctcaggagagtctgtgatcggaaggcagttt
gggtgtgaggttgagaacagcagcctgtgtcgctgtggaaaggagacagtacgctcctct
ctcaccttgctcttcaccatgcactaccctgagcagaactcacttgttaagacgataaag
gagtacgactttgctgagatcctgaagaaaagtatatgtctggagcagagtacgcaggcg
tggtgcgagaactgtgaaaagtatcagcccacagtgcagacacggaacatccgctgcctt
cctgatgtactggtcattaattgtgaggtgaacagtgtcaaagaggctgagttctggaag
gctcaggcagagtacgctttcattaaggccaagaagaaagaggaaatggaaccccctaag
cccaaagaacctccacaaccacctgagtggtgcttagaggaggagctggtcaatacagag
ggcctgacctttgacaccagagtggaggacctacgtcacgtctggatccctctcactctg
aagatgtccatcagcaaaagccagggcctagagatcagcagctggccagaggccgaggag
ctgagctccactgaggaggctgaaggagcgtctctctatgacttggtggttactgtgcct
catgtactggacgctcgcaccgggggcaacctggtagcacacatcaaagtgggagagaca
tatcacatcagaaaagagggggtaacacatcagcagtggtatctattcaatgacttcctg
attgagccaattgacaaggctgaagcagcacagtttgatgtgaactggaagctgcctgcc
atcctgtattacgccaagagaaactaccactccaaatacgacctacgcattaagaatccc
atcgaggccagtgtgctgctgacagaggcgtcactggcgcggaagcagaggaagagccat
gccactttcatccccctcatggtcagtgagatgccccaggctggagatctcgtgggactg
gacgccgagtttgtcaccctcaaccaggaggaggcagagctacgcagcgacggcaccaag
tccaccattaagcccagtcagatgtctgtggcacggatcacctgcgtgcgtggtcagggt
cccaacgaaggagtaccgttcatcgatgactacatctctactcaggagcaggtggtggac
tatctgacccagtactccggcatcaaaccaggggacctggatgctaagatttcctccaag
cacttgaccactctaaagtcaacttacctgaagctgcgcttcctcattgacaccggagtg
cgctttgttggccatggtttacagaaggacttccgggttataaatttgctggtgctgaag
gatcaggttgttgacacagtctacctgttccatatgcctcgtaagaggatgatctctctg
cgcttcctcgcctggtactttctggaccttaacatccagggtgagacccatgacagtatc
gaggatgcacgcactgcccttgctctgtacaggaagtacctggaactgagtcgtggagga
gggaatgacgaagtccgcaaagttctgaagggtctctatgagaaaggccgcaagctagac
tggaaagtccctgactgtgacacaggagatggtcaaggtagcccaaaaagtacgaaactg
gcattgcattag
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