KEGG   Coregonus clupeaformis (lake whitefish): 121538124
Entry
121538124         CDS       T08357                                 
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    121538124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121538124
   03036 Chromosome and associated proteins [BR:cclu03036]
    121538124
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     121538124
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121538124
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WDR55 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin ANAPC4_WD40 Beta-prop_IFT140_1st eIF2A Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 WD40_MABP1-WDR62_2nd ExoI_SH3 Beta-prop_WDR41 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 121538124
NCBI-ProteinID: XP_041701844
LinkDB
Position
24:complement(40338158..40343768)
AA seq 372 aa
MSLFGPSAGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPMMSLQLPERCYCADVVYPMA
VVASAERGLIVYQLENQPSEFRRIDSPLKHQVTGFTYQHRCIAIFKDKQNKPAGFALGSI
EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGR
FSFWDKDARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLR
NATEELKPRNKK
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgagcttgtttgggccaagcgctgggtttggcgcgggaggattcggagcggcaaccacg
gacacacacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgtttagtccccctgccatgccagggaacttcttgataggggggtcctgggcc
aatgatgtgaggtgttgggaggtacaggacaatgggcagacagtccccaaagcccagcag
atgcacacaggtccagtccttgatgtctgctggagcgaagacggaagcaaggttttcaca
gcgtcttgtgataagactgccaaaatgtgggatctcaacagcaaccaggcaatacagatc
gcacagcatgacgctcctatcagaacagtccactggatcaaagcccccaactacaactgc
atcatgacaggcagctgggacaaaactctgaagttctgggacacccgctcgcccaaccca
atgatgtccctgcagctgccggagaggtgctactgtgcagacgtggtgtaccccatggca
gtggtagcgtctgcagagcgaggtttgattgtatatcagcttgagaaccagccgtctgag
ttcaggaggatagactcaccactcaaacaccaggtgactggtttcacataccagcaccgc
tgcatagccatctttaaggacaaacagaacaagcctgctggatttgctcttgggagcatt
gaagggcgggtcgccattcactacatcaaccctcctaacccagccaaggataacttcacc
ttcaagtgccacaggtcgaatggaaccaacacagccacaccgcaagacatctatgctgtg
aatgccatctccttccatcctgtccatggtacactggcgactgttgggtctgacggtcgc
tttagcttctgggataaagacgcccgcaccaagctgaagacctcggagcagctggaccag
ccaatcacagcttgctcgttcaacaacaatggcaacatctttgcctacgcctctagctat
gactggtcaaaggggcatgagtactacaaccctcagaaaaagaactacatcttcctgcgt
aatgctactgaggagctgaaacctcggaacaagaaatga

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