Coregonus clupeaformis (lake whitefish): 121538128
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Entry
121538128 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 6
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121538128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121538128
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121538128
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
DbpA
Nup35_RRM_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121538128
NCBI-ProteinID:
XP_041701850
LinkDB
All DBs
Position
24:complement(40332859..40336799)
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AA seq
337 aa
AA seq
DB search
MPRVYVGKLSYHAREKDIQRFFSGYGKVMEIDLKNGYGFVEFDDNRDADDAVYELNGKEL
CGERVTVEHARGPRRDRDGYSGGGGGRSSSGYSSSRSRTGRDKYGPPVRTEYRLIVENLS
SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFGSRSDMRRALDKLDGTDINGRKIRL
VEEKSRRRRSYSGSRSRSRSRRRSRSRSSRSRSNSRSRSRSHSRSKRRRSRSGRKSRSRK
SRSHSRTRKSRSRSDKSKSRSKSRSKVKSERDSRSRSKEKLASKKSRSRSASPMGNGKEE
PTSHSPSPAADRRSKSPDKRSVSHSPSRSRSRSASRD
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcgtctatgttggaaaattgagttatcatgctcgagaaaaagacattcagagg
tttttcagtggctacggaaaggttatggaaattgatctgaaaaatggatatggctttgta
gagtttgatgacaatcgcgatgcggacgacgcagtgtatgaactgaatggcaaggagttg
tgcggggagcgtgtgaccgtggaacatgccagaggaccgcggcgcgaccgagatggatat
agtggtggcgggggtggtcgcagtagtagtggttacagcagcagcagaagccgcactggc
agggataagtacgggccacctgtccgtactgagtaccggctgatcgttgagaatctgtcc
agccgctgcagctggcaggatctgaaggatttcatgcgccaggcaggagaggtcacgtac
gctgacgcccacaaggagcgtaccaacgagggtgtcatcgagttcggctcgcgttcggac
atgagaagggccctggacaagctggacggcacggacatcaacggaaggaagatccgcctg
gtggaggaaaagtctcgccgccgccgctcctactctggcagccgctccaggtctcgcagc
agacgtcgctctcgtagcaggagcagccgctccaggagtaactccagatcccgctcccga
tcccattctcgcagcaagaggcgtcgctccaggtctggaaggaagtcccgttcccgcaag
tctcggtcccactctcgcacccgcaaatccagatcccgctccgacaaaagcaagtcccgt
tccaagagccgctccaaggtgaaatccgagcgtgattcccgcagccgctccaaggagaag
ttggccagcaagaagtcccgtagccgctcggcatcccccatggggaatgggaaggaggag
ccaacctctcactccccgtccccagcagctgaccgtcgctccaagtctccggacaagcga
tctgtctcccactccccatctcgctccaggtctagatcagcttcccgagattaa
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