Coregonus clupeaformis (lake whitefish): 121538132
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Entry
121538132 CDS
T08357
Name
(RefSeq) mRNA-decapping enzyme 1A
KO
K12610
mRNA-decapping enzyme 1A [EC:3.-.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121538132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121538132
03036 Chromosome and associated proteins [BR:
cclu03036
]
121538132
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121538132
mRNA degradation factors
5'-3' decay
Decapping complex
121538132
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121538132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
121538132
NCBI-ProteinID:
XP_041701857
LinkDB
All DBs
Position
24:40217293..40235261
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AA seq
523 aa
AA seq
DB search
METASKMSLAALQQQDPYINKLLDVTGQVALYTFNSKANEWEKTEIEGTLFVYARSASPH
HGFTIMNRLSTENLVEPINKDLEFQLQDPFLLYRNANLGIYSIWFYDKKDCQRITQLMVK
IVKQEAMQAHRGSPERANVPGRTNGCAEPRPIDILELLSKAKDEYHRTQTGETEMSVTAE
QGVNTETLKTAGGATEHAPSAPQPERNSHSGQRQITVEELFGSSLPKETGLLPAMPTQSS
TDPAAPSPANFLQAQHYAPSIPFQPLLAPRLTAAPGGNNRHLAPGLIPLMEARGGAGPSY
TLHPSPVFPGGPPGEPQHSVSPLLVAPSGAEARGPPPVPPLAYLGQDLLGSLKPSPSDLH
KPALAPNFLPSPLATPQSFREQIPNPAAICSIPTGPVQPQSKEMDVFAQSQKLLKTMPAV
PMKAGLVIPRAGTSLTGAEHSVLLSPSAFQHSVAKTTELQRQAAPPSPPSAATGAVEPPQ
PSCNRTQLQDTLIHLIKNDPAFLSAIHEAYLQILSKDLSNVKL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgccagtaaaatgagcctagcagctctacaacaacaagatccgtatatcaac
aaacttctcgatgttaccggacaggtagcactgtacacatttaattccaaagcaaatgaa
tgggaaaagaccgaaatcgagggcaccttatttgtttatgccaggtctgcttcccctcat
catggcttcacaatcatgaatcggctaagcacagagaatcttgtggagcccatcaacaaa
gaccttgagtttcagctccaagaccccttcttgctgtacagaaacgctaacttgggtata
tacagcatctggttctacgataagaaggactgccagcgcatcactcagctcatggttaag
atcgtgaagcaggaagccatgcaggcccaccggggctccccagagagggccaacgtccct
gggaggaccaatggctgcgcagaacctcgccccatcgacatcctggagctcctcagcaag
gccaaggatgaataccacaggactcagacgggtgaaacggagatgtccgttactgctgag
cagggggtgaacacagagacgctgaaaacagctggcggtgctacagagcatgctcccagc
gccccacagccagaaaggaactcccactctggccagaggcagatcactgtggaggagctg
tttggcagttctctacccaaggagaccggcctgctgccagccatgcctacccagagttcc
acagaccctgctgccccgagccccgccaactttctccaggcccagcactacgccccctcc
atacccttccagcccttactggccccccgcctcacagcagccccagggggcaacaaccgg
cacctggcccctggtctgatccccctgatggaggccagaggtggcgctggcccaagctac
accctccaccccagccctgtgtttcccggtggacctccaggggaaccccagcactctgtg
tccccgctgttggtggctccatctggggctgaggctcgcggtcccccccctgtccctcca
ttggcctacctggggcaggatctcctgggctcactgaaacccagcccctctgacctccac
aaacctgccctcgcacccaacttcctgcctagcccgctggccacgccccagagcttcaga
gagcaaatccccaatcctgctgccatctgtagcattcccacaggccctgtgcagccacag
agtaaagaaatggatgtgttcgctcagtctcagaaactgttgaaaaccatgccagctgtt
cctatgaaggcagggcttgtgataccgagggcgggtacttcacttacaggggcggagcac
tccgtgctgctctcaccgagcgcctttcagcattctgttgccaagacaacggaactgcag
aggcaagctgcccctccctcccctccatctgcagccacaggggctgtggagcccccccaa
ccctcctgcaataggacccagctgcaggacacactcatccacctcatcaagaatgaccca
gcgtttctcagtgccatccacgaggcttacctccagattctctccaaggacctgagcaac
gtcaagctatag
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