Coregonus clupeaformis (lake whitefish): 121538133
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Entry
121538133 CDS
T08357
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04218
Cellular senescence
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04530
Tight junction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121538133
04020 Calcium signaling pathway
121538133
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
121538133
09144 Cellular community - eukaryotes
04530 Tight junction
121538133
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121538133
09153 Circulatory system
04260 Cardiac muscle contraction
121538133
04261 Adrenergic signaling in cardiomyocytes
121538133
04270 Vascular smooth muscle contraction
121538133
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121538133
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121538133
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121538133
NCBI-ProteinID:
XP_041701858
LinkDB
All DBs
Position
24:complement(40133037..40213582)
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AA seq
2145 aa
AA seq
DB search
MQEAEEQPEGAQYASSTRAHPSGDTPALRSENPSHPQPESCPRSGTISWQGAIHAARNAQ
GNAPQSMSTCPSVPGATPAPVGSLSQRKRQQYAKSKKQGGSTNSRPPRALFCLTLNNPIR
RACISLVEWKPFDIFILLSIFANCVALAVYIPFPEDDSNSTNHDLETVEYAFLIIFTIET
FLKIIAYGLVMHQNSYVRNGWNMLDFVIVIVGLFSVVLEVITKEGDVGGQGGKPGGFDVK
ALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKM
HATCYLVGTGILAEEEPVPCAVSGHGHQCMMNGTVCREGWHGPNGGITNFDNFLFAMLTV
FQCITMEGWTDVLYWMNDAMGSELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAK
ARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENDEEGDEEGGKRNPSMPASETESVNT
DNPNREDDKTNCCGPLCQKITKSKYSRRWRRWNRFCRRKCRAAVKSVSFYWLVIILVFLN
TLTISSEHYNQPDWLTEVQDVANKVLLALFTCEMLVKMYSLGLQAYFVSLFNRFDCFVVC
GGIVETILVELAIMSPLGISVFRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASLLLL
LFLFIIIFSLLGMQLFGGRFNFDETITKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIM
AYGGPFSSGMVVSIYFIILFVCGNYILLNVFLAIAVDNLADAESLNTAQKEEEEEKERKR
SSRSDTDKTDDLKPEGQDGEIKIPLEEEVEQEKEPYPTPDTPVGDDDDDDDDDELPEVPV
GPRPQRLSDLGIKEKTPPIPEGSAFFIFSNTNPVRVACHKLTNHHIFTNLILVFIMLSSV
SLAAEDPIRNFSARNIILGYFDYAFTAIFTVEILLKMTAFGAFFHKGAFCRNYFNLLDLL
VVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIV
TTLLQFMFACIGVQLFKGKFYRCTDDAKSSPEECKGTYILYKDGDTVLPAVRERIWYNSD
FNFDNVLMAMMALFTVSTFEGWPALLYKAIDSNRENMGPIYNYRVEISIFFIIYIIIIAF
FMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYV
VNSTGFEYVMFVLIILNTLCLAIQHYGQSHLFNYAMDILNMVFTGVFTVEMILKLIAFKP
RGYFGDAWNVFDALVVIGSVVDIILSQVDNTEDSARISITFFRLFRVMRLVKLLSRGEGI
RTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKIAMVDGTQINRNNNFQTFPQAV
LMLFRCATGEVWQEIMLACLPGKLCDSESDYNPGEERTCGSGFAYIYFISFYMLCAFLII
NLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQPPL
GFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNLEQANEELRAV
IKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGRNSFTSL
NSTIALQAGLRTLHDIGPEIRRVISCDLQDEGLVDINAEEDDEIYRRNGVIFSNHTNHVS
GDHRGSAHQTNVTQRPLQVPPPSCHASVEPSQVGSEERAGDPHCYNHYYPKSPISSNANL
NNANVPAVPSLTNGGQRRCLRREHPSANGALSSSSHRKIVDFDTHTTVQSARRCYYETYI
RSESGGVLYPTIRREEPGGADSDDDRGSGEYFSGEEYQEDDIMLHKNRMSHKEYQDHQTD
FDTEASRDYHQPDSLYDDDQQPIYQDGGRSAKRRLLPSTSHALHRHSFNFHCLRKQSSQD
DDIPLTHSIPHRTALPLHLMQQQVMAVAGLDSRRVQRFSPPRSLRSWATPPVSPISRDHS
HYYTPLIQVDWRGLSSVSSTPCSVRRSSWYTDAPEAPLSRTYSPSQLQIPPEYRRHYHQK
RGSANSLVEAVLISEGLGKYAKDPKFVAATKHEIADACEMTIDEMESAASNLLNGSVGNG
AAATDTVTASSLRDRNLHDYSDEEPDTSGKCEEDLTDEIICISTL
NT seq
6438 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagcagaggaacagcccgaaggggcacagtatgccagcagcaccagagcccat
ccctctggtgacacgccggccctcaggtcagaaaacccctcccacccgcagcccgaatcc
tgcccccggtctggcacaatctcctggcagggcgcgatccatgctgctcgtaacgcccag
ggcaacgccccccagagcatgagcacctgcccctctgtccctggggccacgcctgccccg
gtgggctcactgtcacagaggaagaggcagcagtatgccaagagcaagaagcagggcggc
tccaccaatagcagaccgcccagggccctgttctgcctcaccctcaacaaccccatccgc
agagcctgcatcagcctggtggagtggaaaccctttgatatctttatactgctctctatt
tttgccaactgtgtggccttagctgtttacatccccttcccagaggacgactccaactcc
accaaccacgacctggaaacagtagaatatgccttcctgatcatctttacaatagagacc
tttctgaagatcatagcgtatggtttagtcatgcaccagaactcctacgtaaggaacgga
tggaatatgctggattttgtcattgtcatagtagggttgttcagtgtagttctggaggtg
ataaccaaagagggcgatgtcgggggccaggggggtaaaccgggaggcttcgacgtcaag
gccctccgagcgttccgggtgctccgccccctccgccttgtctcaggagtacccagttta
caggtagtgttgaactccatcattaaagccatggttcctctgctccacatcgctctgctc
gtcctcttcgtcatcatcatctacgccatcatcggcctcgaactcttcatcggcaagatg
cacgccacctgctacctggtgggcaccggtattctggcagaggaggagcctgttccgtgt
gcggtgtcaggccatgggcaccagtgcatgatgaatgggactgtgtgtagagagggatgg
cacggccccaatggtggcatcaccaactttgacaacttcctgtttgccatgctcactgtt
ttccagtgtatcaccatggagggctggactgatgttctgtactggatgaatgatgccatg
ggttctgagctgccctgggtctacttcgtcagtctggtcatcttcggctccttctttgtt
ctcaacctggttctgggagtgttaagcggagagttctccaaggagagagagaaggccaag
gctcgtggagacttccagaagctgagagagaagcagcagctggaggaggatctgaagggc
tacctggactggatcactcaggccgaggacatcgaccctgagaatgatgaggagggggac
gaggaggggggcaaacgcaacccaagcatgcccgccagcgagacagagtctgtgaacact
gacaaccccaacagagaggacgataagactaactgctgtggaccactctgtcaaaaaatt
acaaaatcaaagtacagtcgacgatggcgtcgctggaaccggttctgccgcaggaagtgt
cgtgctgccgtgaagtcggtgtctttctattggctggtgatcatcctggtgtttctcaac
acgctcaccatctcgtcagagcactacaaccaacctgactggctcactgaagtacaggat
gtggccaacaaggttctgctggctttgttcacgtgtgagatgctggtgaagatgtatagt
ctgggcctgcaggcctactttgtgtctctgttcaaccgcttcgactgcttcgtggtgtgt
ggcggcatcgtggagaccatcctggtggagctggccatcatgtctcctctgggcatctct
gtgttccgttgtgtccgcctgctacgcatcttcaaggtcacacgccactgggcatctctc
agtaacctggtggcgtcgctgctcaactccatgaagtccatcgcctccctcctgctcctg
ctcttcctgttcatcatcatcttctccctgttgggcatgcagctcttcggaggcaggttc
aacttcgacgagacgataaccaagaggagcaccttcgacaacttcccccaggcactgctc
acagtgtttcagatcctgacaggcgaggattggaatgctgtgatgtatgatggcatcatg
gcgtacggtggtcccttctcgtcaggcatggtcgtcagcatctacttcatcatcctcttc
gtctgcggaaactacatcctgctgaacgtcttcttggccatcgccgttgacaacctggca
gatgcagagagcctgaacacagcccagaaggaggaagaggaggagaaggagaggaagagg
agttccagaagtgacacagacaagacagatgatctgaaacctgaaggccaggatggggag
atcaagattccattggaggaggaagtggaacaggaaaaggagccatatcccactccagat
actccagttggtgatgatgacgatgatgatgacgatgatgagctgccagaggttccggtt
gggccacgccctcagaggctgtcagacctcggcatcaaagagaagactccgcccatccct
gagggcagcgctttcttcatcttcagcaacactaacccggtccgggtggcctgccacaag
ctgaccaaccaccacatcttcaccaacctcatcctggtcttcatcatgctgagctctgtg
tctctggctgctgaggaccccatacgcaacttctccgcacgcaacatcatacttggttat
tttgactatgctttcacggcaatctttactgttgagatcctgttgaagatgacagcgttt
ggggctttcttccataaaggagccttctgcaggaactacttcaacctgctggacctactg
gtggtgggagtctctctggtgtccttcggcattcagtcatctgccatctcggtggtgaag
atcctgcgtgtgttgagggtgctgcggccccttagggccatcaacagagccaagggcctc
aagcatgtggtccagtgtgtatttgtggccatcaggaccattggtaacattatgatcgtc
accacgctgctacagttcatgttcgcctgcataggagtgcagctcttcaagggcaagttc
tatcgatgcacagacgacgccaagtccagcccagaggaatgcaaaggcacatacatcctg
tataaggatggagacacagtgttgcctgcagtcagagagaggatctggtacaacagcgac
ttcaactttgacaacgtcctcatggccatgatggctctgttcaccgtctctacgtttgaa
ggctggcctgctctgctgtacaaggccatcgactccaacagagagaatatgggtcccatc
tacaactaccgcgtggagatctccatcttcttcatcatctacatcatcatcatcgccttc
ttcatgatgaacatcttcgtcggtttcgtcatcgtcacctttcaggagcagggagagaaa
gagtacaagaactgtgagctggacaaaaaccagcgtcagtgtgtagagtacgctctgaag
gctcgcccgctgcggaggtacatccctaagaacccctaccagtataagttctggtatgtg
gtcaactccactggctttgagtacgtcatgttcgtgctcatcatcctcaacacactgtgt
ttggcgatccagcactatggccagtcccacctgttcaactacgccatggacatcctcaac
atggtcttcactggcgtcttcactgtggagatgatcctcaaactcatcgccttcaaaccc
agggggtattttggggacgcctggaacgtcttcgatgccctggtggtgatcggcagcgta
gtagacatcattctcagtcaggtagataacacagaggacagcgctcgcatctccatcaca
ttcttccgcttgtttcgagtcatgcgattggtcaagctgctcagcagaggggagggcatc
cgaacgctcctgtggaccttcatcaagtccttccaggctcttccctatgttgccctccta
atagccatgttattcttcatctatgctgttattggaatgcaggtgtttggaaagatcgcc
atggtagacggcacacagattaaccgcaacaacaacttccagacctttcctcaagctgtc
cttatgctctttaggtgtgctacaggtgaggtgtggcaggagatcatgctggcatgtctg
ccagggaagctgtgtgactcagagtcagactacaaccctggagaggagagaacctgtggc
agcggattcgcctacatctacttcatcagcttctacatgctctgcgccttcctgatcatc
aacctgtttgttgctgtcatcatggataactttgactatctgacgcgtgattggtccatt
ctgggccctcaccacctggatgagtttaaaaggatctggtctgaatatgaccctgaggct
aagggcaggataaagcatctggacgtggtcaccttgctaagacgcatccagcctcctcta
ggcttcggcaagctgtgtccacacagagtggcctgcaagagactggttgccatgaacatg
cccctgaacagtgatggcacggtcatgttcaacgccaccctgtttgccttggtgaggacc
gctctgaagatcaagaccgaaggcaacctggagcaggccaatgaggagttgcgagcggtc
atcaagaagatctggaagaggaccagcatgaagctgctggaccaagtggtgccgcccgca
ggcgatgatgaggtaaccgtggggaagttctatgctaccttcctgatacaggactacttc
aggaaattcaagaaacgcaaagagcaaggcctggtgggaagaaactcattcaccagcctg
aactccaccatcgccctccaggctggccttcgcacactgcatgatattgggcctgaaatc
cgccgagtcatatcatgtgacctgcaagacgagggccttgtagacattaacgcagaagaa
gacgacgagatttataggaggaacggtgtgatcttctccaaccacaccaatcacgttagt
ggggaccaccggggttccgcccaccagactaacgtcactcagcggccccttcaggtcccc
cctccttcctgtcacgcctctgtggagccctcccaggtcggctctgaggagagggcaggc
gacccccactgctacaaccactactaccccaaatcccccatatcctctaacgccaacctt
aacaatgccaacgtgcccgctgttccctccttgaccaacggggggcagcgccgctgtctc
cgccgtgagcacccgtctgctaatggggcactctcctccagctcacaccgcaagattgtt
gacttcgacacccacaccacggtccaatctgcaaggaggtgctactatgagacctacatt
aggtcagaatcagggggtgttctgtaccccacgattcgtagagaggagccagggggggca
gacagtgatgatgacaggggctctggagaatacttcagtggggaggagtaccaggaggat
gatatcatgttgcacaaaaacaggatgtcccataaggagtatcaagaccatcaaactgac
tttgacacagaggcgtccagggattaccatcaaccggacagtctctatgatgacgaccag
caacccatttaccaggatggtgggcggtcggcgaaacgacggttgctcccctctacatcc
cacgccctccacagacactcattcaactttcattgtctgcggaaacaaagcagtcaagac
gatgacatccccttgacccattccattccccatcgaacagctctacccctgcatctgatg
cagcagcaggtgatggcggtggctggcctggactccagaagagtccagcgtttctctcca
ccacgctctctacgctcctgggccacgcccccagtctcccccatcagcagggaccactcc
cactactacacacccctcatccaggtggactggcgtgggctgagcagtgtgagtagcacc
ccttgctctgtgagaaggagctcctggtacactgacgccccagaagcccccctaagccgt
acctactccccctcacagctccagatcccaccagagtaccgcaggcattaccaccagaag
agaggcagtgctaacagcctagtggaggctgtgttgatttcagaaggactggggaaatac
gccaaggaccccaagtttgtggcggcaacgaagcacgagatcgcggacgcctgcgagatg
accatcgacgagatggagagtgccgccagcaacctgctgaacggcagtgtgggtaatggg
gcagcggccacggacacagtgactgcctcgagcctcagggaccgtaatctccatgactac
agtgatgaggagccggacacgagtgggaaatgcgaggaggatttgactgatgagattata
tgcatcagcaccctatag
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integrated database retrieval system
