KEGG   Coregonus clupeaformis (lake whitefish): 121538142
Entry
121538142         CDS       T08357                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121538142
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121538142
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121538142
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     121538142
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N Adaptin_N Sec7-like_HUS
Other DBs
NCBI-GeneID: 121538142
NCBI-ProteinID: XP_041701901
LinkDB
Position
1:18254919..18279320
AA seq 1060 aa
MMAADSALLVGLVEEFVSGQQDSKAADTATGLKAGQFTILQLVEALGLHLASSQPQTRAR
GVQLLSNVLQERHGDLTEREGKPHYKTSLSFALWVLYGLSMDIDYLLLCVLSSVEVLIVF
YENRLKDHYVITPHVLQGLKALTKCSVLPPGSAVSILKSLFQDVHVQSLMLAERSCVYNI
LIQFMESRESELKGLGADFVFGFVQSVDGERDPRNLLLAFQIARKILHGGYDLGKFTEEL
FEVTSCYFPIDFSPPPNDPHGITQEELILALRAVLTGTPRFAEFLLPLIIEKLDSDVQSA
KVDSLQTLTACASVYEHKELAEFLPGLWASLRREVFQTASERVESAGLAALGALTACLSR
SVLNSDSEDSLNVFLDLVLKDCQHHLCEPDLKLVWPSAKLLQATSTASYRASHRVAAAVM
PSLIEQYNSRTQCAQRRTLLEVLHGFVQPVKSSEEDESVLLDFRQSLCSIVFSALSESSA
GLQITSLRVLTALSQQTVLLLESDVELAVDHLTRLILEEEDAKVSLAVVECAGALARLHP
AAFISKMVPRLKGEIFSESMAQGDSAMPSQEHSQQAVRQRCLTALAAVSSRPSVVQESTP
VLLQVLTTSHTGTGSFSLEEVISVCHSLQRIAEHAQDTEETGRVFHDIIIPRLLGLALQA
ALQGSSDHQSPLMEESVLSVMVPVISTTCARLQSQLAGQTASRAVSLFLDGDVSFLPENA
FPSQIQLLKKQAGDSWSQSQLVCLLMGCVCSLPRSVEVPQMDRLLLELEELSCTCDHPLS
YTSAAKCYAGLVNKRPAGEALDSLIDRMLKRISTELECASSSVRTQAFTLLLWVAKALLL
RYHPLSTALTDKLFSLLSDSELGSLAADGFSLLMSDSPDVLNRGCHADVRIMYRQRFFAE
NSAKLVQGFNSAAQEKKSGYLKALSHIVNHLPRQVQLTELPALLPLLLEALSCPDQGVQL
STLSCLQPVLMDPPSALITQLEALVGRTLTLTTSPAMKVRIASLRCIHALSRFPEHEIMP
FRARVLRALAAPLDDLKRMVRSEAVVARNEWFLLGSPGGR
NT seq 3183 nt   +upstreamnt  +downstreamnt
atgatggctgcggatagtgctttgctagtgggcttggtagaagaattcgtttcgggacaa
caggacagcaaggccgcagacaccgcaacaggactcaaggctggacagtttacaatacta
cagttggttgaagcattgggcttgcatctggccagctcccaaccccagacccgagcccgt
ggtgtccagctcctctccaatgtcctacaggagcgccatggagaccttacagagagagaa
ggtaaaccacactataagacatctttgtcgtttgctttgtgggtgctatatggcctgtcc
atggatattgattatcttctcttatgtgttttgtcctcagtggaagtccttatagtgttt
tatgagaacagactgaaggaccactatgtcatcacaccacatgtcttacaggggttgaaa
gcgctgacaaaatgttcagtgttgccgcctgggtctgcagtgtccattctgaaatcactc
ttccaggacgttcatgtgcagtccctgatgctggcggagcggtcatgtgtttacaacatt
ctcatccagtttatggaatccagagagtcagagctgaagggcctgggtgcagactttgtc
tttgggtttgtccagtcagtggatggggagagggacccacgtaatcttctcctggccttc
cagatcgctagaaaaatcctccatggaggctatgatctgggtaaattcacagaggagctg
tttgaagttacatcctgctatttccccatagacttcagccctccgcccaatgacccccat
ggcatcacccaggaagagctgatcctggccctgagggccgtgctcactggaacaccacgc
tttgcagagttcctgctgccgctgattattgagaagctggactcagatgtgcagagtgcc
aaggtggactctctgcagaccctgacagcctgtgcttctgtgtatgaacataaagagcta
gccgaattcctaccaggcctttgggcctcgctgcgcagggaggtgtttcagacagccagt
gagagggtggagtccgctggtcttgctgccctcggtgccctgacagcctgcctctcccgc
tccgtcctcaactctgactctgaagactccctcaatgtcttcctggacctggtcctcaaa
gactgtcagcaccacctgtgtgagccggatctaaagctggtgtggcccagtgccaagctg
ctgcaggccacctctaccgcctcctacagggcgagccacagagttgcagccgccgtcatg
ccgtcgctcatagaacagtacaacagccgaacacaatgtgctcagcggcgcaccctactg
gaggtgttacatggcttcgtccagcctgtgaagtcatctgaggaggatgagagtgttctg
ttggacttcaggcagtccctttgcagtatagtgttctctgctctgtctgagagcagtgct
ggcctccagatcacatcactgcgtgtgctcactgccctgagccaacagacagtcctgctg
ttagagtcagatgtggagctggccgttgaccacctcaccaggctcatcctggaggaggaa
gatgctaaagtcagcctggctgtggttgagtgtgcaggggctctggctcgtctgcaccct
gcagccttcatctctaagatggttccacggctgaagggagagatcttctcagaatccatg
gcacaaggtgatagcgccatgccgtcccaggaacattcccagcaggccgtgcgtcagcgg
tgtttgacggcgctggctgcggtgtcgtcccggcccagtgtggttcaggagagcacacct
gtcctgctacaggtcctcaccacctcacacactggcactggctcgttctcattggaggag
gtgatctctgtgtgccacagtctgcagaggatagcagagcatgcccaggacactgaagag
accggccgcgtcttccatgacatcataattccgcgcctgctcggactggccttgcaggca
gctttgcaggggtcctcagaccatcagagtcccttaatggaggagtctgtcctatcagtc
atggtacctgtcatcagcaccacctgtgcccgactacagtcccaactggctggccaaaca
gcctcacgggcggtgtccctcttcctggacggtgatgtgtccttcctgccagagaacgcc
tttccctcccagatccagctcctcaagaagcaggcaggtgactcctggagccagtcccag
ctggtgtgtctgctcatgggctgtgtgtgctcgctgccacggagtgtggaggttccacag
atggataggctactgttggaactagaggagttgagctgtacctgtgaccatcccctttcc
tacacctcagccgccaagtgctacgctgggctggtcaacaagaggcctgcaggagaagcc
ctggactctctgatagacagaatgttaaagaggatctccactgagctagaatgtgcgtcc
tcctcggtccgaacgcaggcgttcactctgctgctctgggtggccaaggctctccttctc
cgctaccaccctctgtccacagccctgactgacaagctcttctccctgctcagtgactca
gagctgggttcgttagcggccgatggattctctctcttgatgagcgactcgccggacgtc
ctcaaccgcggttgccacgccgacgtacgcatcatgtaccgccagcgcttcttcgccgag
aactcggccaagctggtccagggcttcaattccgcagcccaagagaagaagtctggctac
ctgaaggcactgtctcacatagtgaaccacctacccagacaggtccagctcactgagcta
ccagcgctcctgcccctcctgctagaggccctgtcctgtccagaccaaggggtgcagctg
tccaccctgtcctgcctgcaacctgtcctcatggaccccccctcagccctgatcactcag
ctggaggcgctagtggggcgtaccctcaccctcaccactagccctgctatgaaagtgcgg
atagcctctctgcgctgtatccatgccctctcccgctttccagaacatgagatcatgccc
ttccgtgcgagggtgctgcgtgccctggctgcccccttggacgacctcaagaggatggtg
aggagcgaggcagtggtggcacggaatgaatggttcctactggggagtccagggggaagg
tga

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