Coregonus clupeaformis (lake whitefish): 121538172
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Entry
121538172 CDS
T08357
Name
(RefSeq) protein SOGA1-like isoform X2
KO
K27704
microtubule cross-linking factor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121538172
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
121538172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
Rsa3
Motif
Other DBs
NCBI-GeneID:
121538172
NCBI-ProteinID:
XP_041701906
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All DBs
Position
24:complement(38839926..38928302)
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AA seq
1881 aa
AA seq
DB search
MTKTKADVNSPTHFVSPKERRHRHKMESGTESADSGQAQPQQQHQFEQQPVVQSIQVNEK
KKINRAPSPARPKDVPGWSLTKIRGGIGTPTLSVKPGSIHLGSRVSRRSPGSGKETKSEK
GKLPGKSTLSVASAQKGGSKSMKGGRKKVSDARNASDDLSKDSGCAAGKLSPTDSSSEIS
DCASEENKVSTDALSSDTESSSRGGGPEGEKSSTDCGDGPPDRGTRGDHHAKTHVDKDRL
SLGVETGEGSISPGDERSLTSFDSRVPTSTSLAFSDLTEEFMDGMHEEFVREIEELRSEN
DYLKDEMEEQRSEMLEMRDMYMEEDVYQLQELRQQFEQANKTCRILQYRLRKAERRSLRV
AQTGQVDGELIRTLEQDVKVAKDVSIRLHNELDSVEKKRGRLEQENEELRVRLQDLEVAK
QVLQAEMEKQRENSLKKRGARPNNKPEKKPSPQEDSSDLKCQLHFAKEESALMCKKLTKM
AKDSEAMREELAKYRSMYGDVDASLTVEEVNDSPHTREAEVRVHLKLVEEEANLLSRRIV
ELEVENRGLRAEMDDMKGQELPPGLGVGGMGGPGGGGLENVMELQRHLQFVEEEAELLRR
SLLEMEEQNKLLMNEINRYKSELPLVSDPDQDDSSSISLLEDGHGGGALISTEAPQEELL
QAARLQIGDLSGKVKKLQYENRVLLSNLQRCDLASYHSSSRPALETDAEAGDSAECLPSK
AHREGPIGGENEPLEEREKKTSTGVPVPLDGDVPLGLKDHEALLAMRDQARLISKAIQLL
TASDSNCPSISLYRKISSSSGEAAEPCVPEKSQQAQPSELQDLTLVEALTGRLRALHTQL
QAFVEQVESLGTTPPGRAQVQGASPLPLLSEAGDSVVGAPFASHPCPPDDQAGEITAEQK
QPNFRDQSERDVKGQKEEGDSRTDSNQNQETQETDTALQISELQALLLDARETAHGTQEE
LTLERQAPTQTDHTHSSSQTLTQLQEEHQKALTRRDFQLQEEHQKALTRRDFQLQSLSLQ
TRLQQKFWSQERNLMVQESHQLKQTLLLLSLKLRCFLKQWRLGRKLDTEAKDVLEVNSLK
DLYLLLEEESLAAHQGDNKMAAAEEQPLSPSISKELCMLEKSYKQTSGVSSTLADLKGAL
QDLSGVLREERQGSQELTQQFARAKASWEVERTELLSLITQLESKLGQAALAGEEKDLQG
PPDLKMALKRDREEYQHLLADSYAAVMDLTKQLQMGERNWSREKLELLEHFSQERGQWEQ
RLQNKMSMHDKTTSERETATDAVTNGSNLLRTKSIPSMPELEGLLEACPFLPGQEVNGTA
NEKGEKDQPNTQAPPLPAHTDLGDLTRRNWKYLTNEVAMMEQGDTPFKTWDCPSSPSSFL
GLGSIQRSYTAPDKTGIRIYYSPPTMRRMERMLAKEKQDKPQAQQGHLSRASTPSDAGAL
EGQPSSSSSASSSSSSYDQWLSSLSNQHRDLLENSSVGAGVAPFHGLEISANLSDDMKEM
TNCVRQAIRSSSLERKCSKDAGSQTVLVSSRSTQTAQFVTVGLQTDGLGSRGVGSLHTKS
SWSPRPSSSLASARSRHISSSLDKVHSRIDRPCCSPKYGSPKLQRRISASSSKLDGGGSS
SASSRDRSLWNLHQRSSTSSGSAWARSTTTRDSPVLSGLNDGLSSLFSVVEHSGSVESLW
KSEPGASPARQAAGKPSGPGPGPGPGPGPGPGPGPGPDTGAQKYGPFQEFFRNVCGRTGT
PMPGGGERGQREVGAMDEPKPECLSGASLVGNDSVTKIVNKRFMRQMPREELGATARDPT
ARDPTARDPTARDPTTRDPTARDLTMSSSMEDAVCDCTSQALTSCFVRPSRSATRHSLGH
CMHLSQESPTATEERLDPNNE
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaaaggctgatgttaattcgccaactcactttgtctcgcccaaggaaagg
agacacaggcacaaaatggaaagcgggacggagagcgcggacagcgggcaggcgcagccc
caacaacagcaccagttcgagcaacagcccgtagtgcagtccatccaagtgaacgagaag
aaaaagatcaaccgggctccgtcacccgccagacccaaggatgtgcctggatggtccctc
accaagatccggggaggcatcggtacaccaacactgagcgttaaaccaggatccatacat
ttaggcagccgggtgtccaggcgtagtccgggtagcgggaaagagaccaaatcagagaaa
ggaaaactgccggggaaatccacactatcggttgccagtgctcagaagggcggcagtaaa
tcgatgaaaggtggtcggaagaaggtgtccgatgcaagaaacgcctcggacgacctgagc
aaagactctggttgcgccgcgggcaagctgtcgccaacggatagcagttccgagatctcc
gattgcgcctcggaggagaataaagtctccaccgacgctctgagtagtgacaccgaatcc
agcagccgaggcggggggcctgagggcgagaaatcgagtacggactgcggagatgggcca
ccggataggggtactcgtggtgaccatcatgccaagacccacgtagataaggaccgactc
tccctgggagtggagaccggggaggggagcatttctccgggggatgaacggtctctcacc
tcgttcgacagccgggtgcctaccagcacatccctggctttctccgacctgacagaagag
ttcatggacggcatgcatgaagaatttgttagggaaatcgaggaactgagatcagaaaac
gattacctaaaagatgagatggaggagcagcgctcggagatgttggagatgagggacatg
tacatggaggaggatgtgtaccagctgcaggagctgaggcagcagtttgagcaggccaac
aagacctgccgcatcctgcagtatcgcctccgcaaggccgagagacgcagcctccgcgtg
gcccagacgggacaggtggacggggagctcatccgtaccctggagcaggacgtcaaggtg
gctaaagacgtgtccatccggctgcacaacgagttggactctgtggagaagaagaggggc
cgtctggagcaggagaatgaggagctgagggtcaggctccaggaccttgaggtggccaag
caggtcctgcaggctgagatggagaagcaacgagagaactctctgaagaagagaggcgct
cggccaaacaacaagccagagaagaagccgtctccccaggaggacagctctgacctcaag
tgccagctccactttgccaaggaggagtcagcgctcatgtgcaagaagctgaccaagatg
gccaaagacagcgaggcaatgcgggaggagctggccaagtaccgctcgatgtacggcgac
gtggatgcctctctcaccgtggaggaggtcaacgactcgccccacacccgcgaggccgag
gtcagagttcacctgaagctggtggaggaggaggccaacctgctgagccggcgcatcgtg
gaattggaggtggagaaccgtggcctgcgggccgagatggacgacatgaagggccaggag
ctgccaccaggcctgggggtcggaggcatgggagggcctggaggaggaggtctggagaac
gtgatggagctccagaggcacctgcagtttgtggaggaggaggcggagctgctgcggcgc
tcgctgttggaaatggaggagcagaacaagctgctgatgaacgagatcaaccgctacaag
tcagagctgccgctggtgtcggacccagaccaggacgactcctcgtccatctctctcctg
gaggacggtcatggtggtggggctctgatcagcacagaggccccccaggaggagctgctt
caggccgccaggctccagattggggatctgagcggcaaggtgaagaagctccagtatgag
aaccgtgtgttgctgtccaacctgcagcgctgcgacctggcctcctaccacagctcctcc
aggcccgccctggagaccgacgcagaggcaggggactcagccgagtgcctccccagcaag
gcacaccgcgagggccccatcggaggggagaacgagcccctggaggagagggagaagaag
acgtccactggggttcctgtccccctggacggtgatgtccccctggggctgaaggaccac
gaagccctgctagccatgagggaccaggcacgcctcatctctaaagccatccagctgctg
accgcctcagactccaactgcccctccatctccctctaccgcaagatctcctcctcctcc
ggggaggctgcagagccatgtgtcccagagaagagccagcaggcccagccctcagagctc
caggacctgaccctggtggaggctctgacgggcaggctgcgagcgctgcacacccagctc
caggcctttgtggagcaggtggagagcctagggaccacccccccagggagggcacaggtg
cagggggcatcccccctgcctctactgtctgaggctggggactctgtggtgggtgcaccc
tttgcctctcacccctgccctccagacgaccaggcgggtgagatcacggctgagcagaag
cagcccaactttagggaccaatcagagcgcgatgtgaaaggtcagaaggaggagggtgac
agccgcactgacagcaaccagaaccaggaaacacaggagacggacacagctctgcagatc
agtgagctgcaggcccttctgttggatgcgagggagacggctcacgggacgcaggaggaa
ctgactctggagagacaggcccccacacagacagaccacacccacagcagttctcagaca
ctcacacagctgcaggaggagcaccagaaggccctgacgcggagggactttcagctgcag
gaggagcaccagaaggccctgacgcggagggactttcagctgcagagtctgagtctgcag
acacggctgcaacagaagttctggagccaggagaggaacctgatggtgcaggagtcccac
cagctcaagcagaccttgctgctgctcagcctcaagctgcgctgcttcctcaaacagtgg
cgtctgggacgcaagctggacacggaggccaaggatgtcctggaggtgaatagtctgaag
gacctgtacctgctgctggaggaggagagtctggccgcccaccagggagacaacaagatg
gccgccgcagaggagcagcccctcagccccagcatctccaaggagctctgcatgctggag
aagagctacaaacagacgagcggcgtgagcagcactctggcagacctcaagggagcgctc
caggatctgagcggagtgctgcgagaggagcgtcagggctcccaggaactcacccagcag
tttgcccgtgccaaggcctcctgggaggtggagaggacagagctcttgagcctcatcacc
cagctggagagcaagttgggccaagctgcgctggccggggaggagaaggacctccaagga
cctcccgacctgaagatggccctgaagagggatcgtgaggagtaccagcacctcctggcc
gactcgtacgccgccgtcatggacctgaccaagcagctgcagatgggagagaggaactgg
agccgtgagaagctggagcttctagagcacttcagtcaggagagaggccagtgggagcag
aggctacagaacaagatgtctatgcacgacaaaactacctccgaaagggaaactgcaaca
gatgctgttacaaatggaagcaatttactaaggaccaaatccatcccgtccatgccagag
ttggagggtctgctggaggcctgtcctttccttccgggtcaggaggtcaacgggacagcc
aatgagaagggagagaaggaccagcccaacacccaggcccctccccttccagcccacaca
gacctgggtgacctaaccaggaggaactggaagtacctgaccaatgaggtggctatgatg
gagcagggtgatacccccttcaagacatgggactgccccagctcccccagtagtttcctg
ggcctggggagcatccagaggagctacacggcccccgacaagaccggcatccgtatctac
tacagcccccccaccatgcgccgtatggagaggatgctggccaaggagaagcaggacaaa
cctcaagcccagcaaggccacctgtcccgggcttcaactccgtcagacgctggggccctg
gagggccagccttcttcttcctcctctgcctcctcctcctcttcgtcctacgaccagtgg
ctgagctctctgtccaaccagcacagggaccttctggagaacagcagtgtgggtgcgggg
gtggcgcccttccacggcttggagatctctgccaacctctcggacgacatgaaggagatg
accaactgcgtgcgccaggccatccgctccagctctctggagaggaagtgcagcaaggac
gcaggcagccagacggtgttggtgtctagccgctccacccagacggcccagtttgtgact
gtgggactgcagacggacgggctcgggtctcgaggggtagggagcctccacactaagtcc
tcctggtccccccggccttcgtcctcactggcctcggcccgctcacgccacatctcctcg
tccctggataaggtgcacagccgcatcgacaggccctgctgctcacccaagtacggctcc
cccaagcttcagcgccgcatctccgcctcctcctccaagctggacggaggagggtcgtcc
tcggcatcctcccgtgatcgcagcctgtggaacctgcaccagcgctcctcgacctccagt
ggctcggcctgggcccgctccaccaccaccagagacagccctgtgctcagtggcctcaat
gacggcctgtccagcctgttcagcgtggtggagcactcaggcagcgtggagtccctatgg
aagagtgagccgggggccagcccagcccgccaggcagcagggaagccctctggccctggc
cctggccctggccctggccctggccctggccctggccctggccctggcccagacaccgga
gcccagaaatacggccccttccaggaattcttcaggaacgtgtgcggccggaccgggacg
cccatgcccgggggaggggagagagggcagagggaggtgggggccatggatgagccaaag
ccagagtgcctctccggggcctcgctggtggggaacgacagtgtcaccaagatcgtcaac
aagaggttcatgagacagatgcccagggaggagcttggggccaccgccagggaccccacc
gccagggaccccaccgccagggaccccaccgccagggaccccaccaccagggatcccact
gccagggacctgaccatgagctccagcatggaggatgcagtgtgtgattgcacctcccag
gctctgacttcctgcttcgtccggccctcccgctcggccacacgccattcactgggccac
tgcatgcacctctcccaggagtctccaacggcaacagaggagagattggatccaaacaat
gagtga
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