Coregonus clupeaformis (lake whitefish): 121538233
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Entry
121538233 CDS
T08357
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00310
Lysine degradation
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121538233 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121538233 (prdm16)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121538233 (prdm16)
Enzymes [BR:
cclu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
121538233 (prdm16)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
121538233 (prdm16)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
121538233 (prdm16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_6
zf-C2H2_jaz
SET
zf-H2C2_5
zf-BED
zf-C2H2_11
C2CH-3rd_BIRD-IDD
C2CH-4th_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
121538233
NCBI-ProteinID:
XP_041702008
LinkDB
All DBs
Position
24:35971677..36177227
Genome browser
AA seq
1413 aa
AA seq
DB search
MRSKARARKLAKNDSEPVDSMYETEPHLLAGGAESGEEETEDSIMSPIPVGPPSPHPNNH
HHHSHHGHHHHHNEDPFTPKEGSPYEVPVYIPDDIPIPSDLELRESSVPGAGLGIWAKTR
IGIGECFGPHSALQSATVKDGSFGWEQMLNDHEAASSPESCIKKVVDEMGNVKFCLDEGS
EAGGSWLKYVRTAPSFEEQNLAACHLSGDQIYYKAIRDIEVGEELLVYMKDGLFPEGSMA
PNLEDEQMYRCEDCDELFTSALELRRHQKYSCASAGSLFDTLSNEDFKQERDDSDHEPIH
ECKDCEKIFPNEYSLGQHMIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECEN
CDKVQHTRHVFTDPSNLQRHIRSQHVGARAHTCPECGKTFATSSGLKQHKHIHSSVKPFI
CEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHYGPVG
GLFAPGIPMSSSPILAKSKSHHHPHHHPGLNHSGLAFPDYFPSRPHPHPHAGLPFSPGPH
GFPSLSHGFPGLFPPSLYPRPPLLPPSPLLKSPLGNNSNNGGIQEGKLPRSPLDGPPLSL
VSSINNSNGGSSLLSSQEREDKDRLAYGEAKAKAKMSEVSDGSDLEDVNTTSGTDLDTTT
GTASGSDLDSDAESEREQRERSSGAKRRKAAGAGGARGTERAGLEGRPDDVSSGSVSAVS
SSGNLACERPSFLSAASQHSFFPPPEEQALPPTGGAAATDSIKAIASIAEKYFGPGLMGL
QEKKMGSLPYHSMFPFQFLPNFPHSLYPFAERTGTLNPGMFFKAEPKSPREQHPTPHKMA
AQGTGESSPFDLTTKPKEAKPAPPAPAKPTPPSGSSNAPLILPGGEEQPLDLSIGSRRRD
GHNGMVAPEQPPSRKNHRKEEHPGSHPHSHAQHPQGHSLLQPPLPQHQQPLAQPPQQQPS
LHYAKPSPFFMDPIYSRVEKRKLLDPVGALKEKYLRPSPLLFHPQLQYLYRGTPSLPQMS
AMENMTEKLESFGALKLDAPPNSLQHSAHPLFNFRSPPPSLSDAILRKGKERYTCRYCGK
IFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFG
QQTNLDRHLKKHEHENIPVSQHSGILSNLGNNISSPNSEPDNHALLDEKEDSYFSEIRNF
ISNSELNQASSSTDKRSELAEEERPSSHSLSNSKMEARGLEEEEEEAEGDDEEEEEGSLT
EKSQDEAPESPSPVTMVTQEAYEDEEEEEAEEDEEATPLAMSYEHTRRCIEEDGGLLDLE
SLPSFPKGLELHKASSSEEPPFDVKDIFNTASLESEALKETLYRQAKTQAYAMMLSLSEN
NPLHASSQNSLDAWLSMGGGPSETSSFHPLNHI
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcgagggcgagaaaactggccaaaaatgacagtgagccagtggacagc
atgtacgagacagagccccacctcctggcgggaggggccgagagtggcgaggaggagacc
gaggacagcatcatgtcccccatccctgtaggacccccatcaccacaccccaacaaccac
catcaccacagccaccatgggcaccaccatcaccacaacgaagaccccttcacgcccaag
gaaggctcgccctatgaggtgcccgtctacattcccgacgatattcccatccccagtgac
ctggagctgcgcgagtcctcagtccccggagcgggcctggggatatgggccaaaactcgg
atcgggataggagagtgcttcggacctcacagcgcactgcagagcgccacagtcaaagac
ggctccttcggatgggagcagatgctgaatgaccacgaggcggcgtcctctccggagagc
tgcatcaaaaaggtggtggatgagatgggaaacgtcaagttctgcctggacgaaggctcg
gaggccggcgggagctggctcaagtacgtacgcaccgccccctccttcgaggagcagaac
ctggcggcatgtcacctcagtggagaccagatttattataaagctattagggatattgaa
gtaggggaggagctactggtgtatatgaaggacggacttttcccggagggatcgatggca
ccgaacctagaagacgaacagatgtaccgctgcgaggattgtgatgagctgttcacctcg
gccctggagctgcggcggcaccagaagtactcgtgcgccagcgccggctccctgttcgat
acgctcagcaacgaggacttcaagcaggagcgcgacgacagcgaccacgagcccatccac
gagtgcaaggattgcgagaagatcttccccaacgagtacagtctgggccagcacatgatc
gtgcacacagaggagcgggagtacaagtgtgaccagtgtcccaaagccttcaactggaag
tccaacctcatccgccaccagatgtcccacgacagcggaaagcgcttcgagtgtgaaaac
tgcgataaggtacagcacacccggcacgtgtttacggaccccagcaacctgcagcgccac
atccgctcacagcacgtaggggcgcgcgctcacacctgcccagagtgtggcaagaccttc
gccacctcctcgggcctcaagcagcacaagcacattcacagcagtgtcaagcccttcatc
tgcgaggtgtgccacaagtcctacacgcagttctccaacctgtgccgccacaagcgcatg
catgccgactgccgcacccagatcaagtgcaaggactgtggccagatgttcagcactacc
tcctccctcaacaagcaccggcgcttctgtgagggcaagaaccattacggccctgttggg
ggccttttcgctcccggcattcccatgagcagcagccccattctggccaagtccaagtcc
caccaccacccccaccaccacccaggcctcaaccactcgggcctggccttccccgactac
ttcccctcccggccacaccctcaccctcatgccggccttcccttctcccctgggccgcat
ggctttccctcgctctcccacggcttcccgggcctcttccccccctcgctctacccccgg
ccgcccttactgccccccagcccactgctgaagagccccctgggcaacaacagtaacaac
ggtgggattcaggagggcaagctgccccgcagccccctggacgggcctccactgtctctg
gtcagctccattaacaacagcaatggaggcagtagtctcctcagcagccaggagagggag
gacaaggataggctggcgtacggcgaggccaaggccaaggccaagatgtcggaggtgtcg
gacggcagtgacctggaggacgtcaacaccaccagcggcaccgacctggacaccaccacc
ggcaccgcctcgggttcagacttagacagcgacgcagagagcgagcgggaacaacgggag
cggagcagcggcgccaagaggaggaaggcggcaggcgctggaggggcgagggggacggag
agggcgggtctggaagggcggccggacgatgtgagtagcggctcggtgtcggcggtgtcc
agctcgggcaacctggcctgcgagcggccctccttcctctcggccgcatcccagcactct
ttcttcccgcctccggaggagcaggcgctgccccccacaggtggcgctgctgccaccgac
tccatcaaggccatcgcctccatcgcagagaagtactttggccctggccttatgggcctg
caggagaagaagatgggctcgttgccctaccattccatgttccccttccagttcttaccc
aacttccctcactccctctaccccttcgccgagcggaccggcaccctcaaccctggcatg
ttcttcaaggctgagcccaagtcgcctcgtgagcagcatccgacaccccacaaaatggcc
gcccagggcaccggagagtcatcgcccttcgacctcaccaccaagcccaaggaggccaag
ccggccccaccggcccccgccaagccgaccccacccagcggtagcagcaacgcccccctc
attctccccgggggtgaggagcagccactggacctgagcatcggcagccgccgacgggac
ggacacaacgggatggtggcccccgagcagccgcccagccgcaagaaccaccgcaaggag
gagcaccccggcagccacccgcactcccacgcccagcacccccagggccactccctcctc
cagcccccgctgccccagcaccagcagcccctggctcagccgccccagcagcagccctcc
ctgcactacgccaagccctcacccttcttcatggacccaatatacagcagggtggaaaag
aggaagctactggaccctgtgggagctctgaaggagaagtacctgaggcccagcccgctg
ctctttcatccacagctacagtatctttaccgtggtacaccttctttacctcagatgtcg
gccatggagaacatgacggagaagctggagagcttcggcgctctcaaactggacgccccg
cccaactcactgcagcactcggctcacccgctcttcaacttccgctcgccgccgccctcc
ctctctgacgccatcctccgcaaaggaaaggagcgctacacctgcaggtactgtgggaag
atcttccccaggtcagctaatcttaccaggcacttacggacacacacaggagagcagccc
tacaggtgtaaatactgtgaccgctcgttcagcatctcctccaacctccagcggcatgtg
cgtaacatccacaacaaggagaagcccttcaagtgtcacctgtgcaaccgctgcttcggc
cagcagaccaacctggaccgccacctcaagaagcacgaacacgagaacatccccgtgagt
caacactctgggatcctctccaacctaggaaacaacatttcttctcccaactccgagcca
gacaatcatgcacttttagatgagaaggaggactcgtacttctcagaaatccgcaacttc
atttccaacagcgagctgaaccaggcatccagctcaacagacaagaggtcagagcttgcg
gaagaggagcgtccatccagccacagtctgtccaactccaagatggaagcccgggggctg
gaggaagaggaggaggaggcggagggagacgacgaagaggaggaggaaggcagcctgaca
gagaagtctcaggacgaggcgcctgagtccccctccccggtcaccatggttacgcaggag
gcgtacgaggacgaagaagaggaggaggcggaggaagatgaggaggccacaccgctggct
atgagctacgaacacacccgcaggtgtatagaggaggacggtgggctgttagacctggag
tccctgcccagcttccccaagggcctggagctgcataaggccagcagcagcgaggagccc
ccctttgatgttaaagacatttttaacaccgcctcgctcgagtctgaggccctgaaagag
actctgtacaggcaggctaaaacccaggcttatgcaatgatgctgtctctgtcggagaac
aaccctttgcacgcgtcctcccagaactcactggatgcctggctgagcatgggaggaggc
ccgtccgagacgagcagctttcacccactcaaccacatctag
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integrated database retrieval system
