Coregonus clupeaformis (lake whitefish): 121538291
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Entry
121538291 CDS
T08357
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00310
Lysine degradation
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121538291 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121538291 (prdm2a)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121538291 (prdm2a)
Enzymes [BR:
cclu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
121538291 (prdm2a)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
121538291 (prdm2a)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
121538291 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2H2_6
zf-C2HE
zf-C2H2_jaz
ANM3_zf-C2H2
zf-C2H2_11
zf-C2H2_ZNF462_1st
Motif
Other DBs
NCBI-GeneID:
121538291
NCBI-ProteinID:
XP_041702095
LinkDB
All DBs
Position
24:32460466..32478770
Genome browser
AA seq
1487 aa
AA seq
DB search
MEDSPTLYISELGDDDNVEEGEEMGDKEPEETHCSLYLMSMETDELADSNTSCQKPEAKG
CDLKLDLGSVSHSTTPELPEDPDDDPDVELQDSFPCQFCERHFTSKQGLERHIHIHTLAN
HHTHIFKCKYCSKSFGSKIGRRRHERRHENAKARPGSLIKPVKPLSLALQSDGPECGSSP
SSSGASVLAEGEQASTSDEHGELQGGHTCKYCKKVFSTHTNMRRHQRRIHERHLRLKGKE
APLLQEAKHPKLPPIKSQQDTSNTIPVAVLEIKSDQEEQYMLDISGNISENLSFYIDGKI
VSTSTVSSCEVVEVNSGSSTLVGLNAVIIDPAQISQALKVEAATRTGKGIPGQPLTKRRT
ATPPLLPQIKTELESEAVVSSSSSSSLVSSLIESLIPQNTESTILQRERTVYLSPKLKQL
LQTQNGLKPTFALITEGQKLCSPLSMTVLPAGLGRFKRRTGSPPNSPQQSPTSNVESTTT
VVAVSIALNAPTSASQCSSPACSLSSNYESEISTSPPVDDAMTTRVLPEGWSPMSGGSSC
NQQPLDLSNAVKKSEDEALGEAVLDLSVHRKSADDSEAKGIFVPQPLNKKRKPNTSMLEK
VLMNEYANLEVAAEQELSILENHDAPLVTDIAIVTDSDMSPATEGVVFGLTLPSAALSPS
PSSLASVTMQSISPCTIALASPSPHPVLPTAPSLITVLAPPTSSSSSSTNQPILQVLAPK
ISPKPLIICTENSLNSAECEWRAALSDWPTSNSASQLAISKPLDPTLNLQGHVFLTDHTI
NQIALNTTTLESNIGFEVPTCSPALTLNDSLINSFNINSNTVLIECTVALETPENLVPTT
IAFQENNVEPTAPAQIVINQQQLLSLPHETVDPTILVSSLEQSVTLSTSSAVISECPTRQ
ESISSPVPAIIKEESNKKEVSEDMSICPSRTAPPSVDGTSQVEESSNETLSKLQETFTKD
FMCNVCDKLFHSMKELGHHVSEHSDEWPYKCEFCVLLFGKPTALLEHRSTLHGVGKSYVC
SACTKEFAYLCNLKHHQKELHPGQECKYTEEENGKLRPQNYNNATKVSTEASSYCAMAES
NKPVIKDEGELDDATEELFTTIKVMASEGGKSKGLDVCLGINQHYPSFKPPPFPYHNRTP
VGSIASATNFTTHNIPQTFSTAIRCTKCGESFDNMPELHKHILTCANASDKRRYTPNKNP
IPLRHFAKAQNGVLSSTNSTNGQNALHMASQTNRPKLNQEPPAKLKLNALNRRKKQLVQR
AISQRSKSTSLTKKASSLVDEEQEIYVCPHCIREFTYRRSRTKHMAVCPRKPASKEAKKR
KDGGISYTKENNGHLRRGVLHLEEKRQGSDHEHKNRAHSSSPTKRTAILPAHKVLSNKKS
KAIIANASVQPQQEAPKLTALSLVRPFNSPQHQGSRMQHGVKEIPSNITMVKSHQQQPQD
EHPSSQCRGRVSGPVTRSLQQIVITASAKKEPLTSQEPPRELQDPSI
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggaagactctcccactttatacatctcagagttgggagatgatgacaatgtagaggag
ggggaggagatgggggacaaggagccagaggaaactcactgcagtctttatttaatgtcc
atggaaacggatgagctggcagattcaaacacaagttgccaaaaacctgaggccaaaggc
tgtgacctgaagctggatttaggatcggtctcccattcaacaacccctgagctcccagag
gatcctgacgatgaccctgatgtagagctccaggactcatttccctgccaattctgtgag
agacattttaccagcaagcaaggcttagaacgccacatacacatccacaccttagccaac
caccacacacacatatttaagtgtaagtactgcagcaagtcctttggctcaaagattggc
cggcgacggcatgagaggagacatgaaaatgcaaaggcaaggcctggatctttaataaag
cctgtgaagcctcttagtttggccttacagagcgacggtccagaatgtggttcttctccc
agtagctccggtgcctctgttttggcagaaggagaacaggcatctacgtcagatgaacat
ggagaattacagggtggtcacacttgcaagtattgcaaaaaggtttttagcacgcataca
aacatgcgacgacatcagcgcaggatccacgagcgccacctccggctcaaaggtaaggaa
gccccactgttgcaggaagcaaaacatccaaagctaccccctattaaatctcaacaggat
acctctaacacaatcccagtagcagttcttgagatcaaaagtgaccaagaggagcaatat
atgctggatatctctggtaacatctctgagaacctcagtttttatatagatgggaagatt
gtgtcaacaagcactgtcagcagctgtgaggtagttgaagtgaactctgggtcttctact
ttagttggactgaatgctgtgattattgatcctgcccagatcagtcaggctcttaaagta
gaggctgctactcgcacaggaaaggggatacctggtcaacccttgacaaaaaggagaact
gccacaccacctcttctaccccaaatcaaaactgaactagagtcagaagctgttgtgtcc
tcctcttcttcatcatcacttgtgtcatctttgatagaaagtctcattcctcagaacacc
gagtctactatccttcagagagagagaacagtttatctgtcacctaagctgaaacagctc
ttacagacgcaaaatggcctcaaacccacctttgccctgatcacagaaggccagaagctg
tgttcaccactttccatgactgtcctcccagcaggattggggaggtttaaaagaaggaca
gggtctccaccaaactcaccacagcaaagccctacgtcgaatgttgaaagcacaacaaca
gttgtggccgtttctattgctctcaatgccccaacgtcagcgagccagtgcagttcacct
gcatgcagtttatctagcaattatgagagtgagatctccaccagtccaccagtagacgat
gcaatgacaactcgtgtcttgccagagggatggtccccaatgagtggtggtagttcctgc
aaccagcaacctttggacctctcaaatgctgtcaagaaaagtgaagatgaagccctgggg
gaagctgtgttggacttgagtgtgcacagaaagagtgcagatgattcagaagcaaaggga
atttttgttccacagcccctaaataaaaagaggaagccaaacaccagcatgttggagaag
gtgctgatgaatgagtatgcaaacctagaggttgctgcagagcaagagttaagtatatta
gaaaatcatgatgcaccgttagttacagacattgccatagttactgattcggatatgtca
cctgctactgaaggagttgtgttcggattaactttgccctctgcagcacttagtccatcc
ccttcctctctagcttcagtcaccatgcagtcgatctcaccatgcaccatagcacttgct
tccccatctccacatccagtcctaccaactgctccgtcgctaattactgttttagcacca
ccaacatcttcctctagcagttccacaaatcaacctatccttcaagtattggcccctaag
atatctcctaaacctttaataatctgcactgaaaattcattgaattcagctgagtgtgag
tggcgagctgctttgtcagattggcctacctctaattctgcaagccaacttgccatctct
aaaccccttgacccaacgctcaatctacaagggcatgtgtttctcacagatcacactata
aatcaaatagctctaaacactaccacacttgaatccaacattggatttgaagtgccaaca
tgctctccagctttaactctaaatgattccctcatcaactcctttaacattaatagtaat
actgttttaattgaatgcacagtcgctcttgaaaccccagagaaccttgtccctaccaca
attgctttccaagaaaataatgttgaacctacagcacctgcgcaaattgtcataaatcag
cagcagcttctgtccttgcctcatgaaaccgttgaccctactattttagtatcttcttta
gagcaatctgttaccctttcaacctcgtctgcagtcatatctgaatgtccaactcgtcaa
gaatccatttcctcccctgttcctgccattattaaagaggaatctaacaaaaaggaagta
tcagaggacatgtctatctgcccctctagaacggcacctccctctgttgatggcacaagt
caagtggaagaatcctcaaatgagacactctccaagctacaagagactttcactaaggac
ttcatgtgcaatgtatgtgataagctttttcattcaatgaaggaactgggtcatcatgta
agtgagcattcggatgaatggccatacaaatgtgagttctgtgtgctgctctttgggaag
cccacggcattgcttgagcacaggtcaaccctccatggcgtcggcaagagctatgtttgc
agtgcatgtacaaaggaatttgcttatctttgcaacctgaaacatcatcagaaggagttg
caccctggtcaggaatgcaaatacacagaggaagaaaatggcaagctacgaccccagaac
tacaacaatgcaacaaaagttagcacagaggcttcgtcctactgtgccatggcggagtcc
aataaacctgtcataaaagatgagggagaattagatgatgctactgaggaactctttacc
acaataaaggtaatggcttctgagggaggcaaatcaaaaggcctggatgtttgccttggc
atcaaccaacactatcccagttttaagccgcctccgtttccctatcacaaccggacacct
gttggctctatagcctcagctaccaacttcaccacccacaacatcccacaaaccttcagc
acagctatccgatgcactaaatgtggtgaaagctttgataacatgccagagctgcacaaa
cacattcttacctgtgcaaatgccagtgacaaaagacgctacactcccaataagaacccc
atccctcttcgtcactttgcaaaagcccaaaatggagtactgtcctctactaattcaaca
aatggccaaaatgcgctacacatggcaagtcaaacaaatcggcccaaactcaatcaggag
ccacctgccaagttgaagcttaatgcgctcaacagaaggaaaaaacagctggtacagagg
gccatttcacagaggagtaagtctacctctttgacaaagaaagcctcttctctagtggat
gaggagcaagagatctatgtctgtccacattgcattagagaattcacataccgccgcagc
cgaaccaagcacatggccgtctgccccaggaaacctgcttccaaagaggccaagaaaaga
aaagatggtggtatctcttacaccaaggaaaataacggccaccttcgaagaggagttctt
catttggaagagaaacggcaaggatctgaccatgaacataaaaacagagcccatagttct
agtccaacaaagaggacagccatattaccagctcataaagtcctgtcaaacaaaaaaagt
aaagccatcattgcaaacgcaagtgtccaaccacagcaagaggcacccaaactgactgca
ctgtctcttgttcgccctttcaactccccacaacatcaaggcagtaggatgcagcatggt
gtaaaagaaatcccttctaacattacaatggtgaaatcccaccaacaacaaccacaggat
gagcacccctccagtcagtgtcgtggaagggtgagtggaccagtgacccgcagtctacag
cagattgtcatcacagcttcggcaaagaaagaaccgctgaccagtcaggagccaccaagg
gagctgcaggatccttcaatttga
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integrated database retrieval system
