Coregonus clupeaformis (lake whitefish): 121538360
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Entry
121538360 CDS
T08357
Name
(RefSeq) VPS35 endosomal protein-sorting factor-like isoform X1
KO
K25731
VPS35 endosomal protein-sorting factor-like
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121538360
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
Retriever complex
121538360
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Gene cluster
GFIT
Motif
Pfam:
Vps35
DUF5667
Motif
Other DBs
NCBI-GeneID:
121538360
NCBI-ProteinID:
XP_041702261
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Position
1:18289487..18302746
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AA seq
970 aa
AA seq
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MAAVQWHSRSRRYEAELQSCGLEVAPVEFGDYHPLKSVTVTDSKSLRGARKGSTSSSSNS
VAPDPLSSMLDGTDPLSMFASASASEPPLTLSHSSSTGDLGRGKRMEMEDEVGVNFEPWS
SKRGEILARFTTTEKLSINLFMGSDKGKAPSPGSSAVSEKVRTRLEELDDLEEDSQRELL
NLSQQDYVNYIEKLNKSLKEAWASDQKVKALKIVIQCSKLLSDTAVIQFYPSKFVLITDI
LDIFGQLVYERIWSMCSDPRSLPDPSPDSFTADVNVNDTAKKTCLNWFFKIASIRELIPR
LYVEVALLKCNRFLTKCGIQETLPRLTAMIRGIGDPLVAVYARAYLCRIGMEVAPHLKDC
LNKNVFDLLGMFRQIHGDSVQNQLVLQRVEIPVYLTLYSPAIHWILQCVSYRAPEPLLTE
MMERCKKIGNNALLLNSVMWAFRAEFIATRATDFIGMIKDCDEAGFPKHLLFGSLGRSLA
CADPPEAERLPILNEAWKVITKVHSPQDYINCAEIWVEFTCRHFTKREVNTVLSDIIKHM
TPDRAFEDAYAQLQSVIRKILIYFHDFSVLFSMERFLPFVDMFQKDSVRVEVCRSIMDVF
IKHQQEHTRDPVILNALLHICKTMHDSVNALTLEDEKRSLALLINGFICMVSFGRDFEQQ
LSFCVEARATFCNLEPVLVQLIHTVNLLAMETNRVMRGSHSHKTAAFVRACAAYSFITIP
SLSSIFSRLNLYLLSGQVALANQCLFQADAFLKAAVSVLPEVPRSICIEGKLRSSEGFLL
DFINNFLSALLVVPDHPEAGVLYLVRGLLNMVQDYTWEENSDAKFHVYISALPLLAAMSQ
ETYLYSIPKVDSNETLYGGDPKFVAEINKLCETLIGHVLDHLKSLGRDESVRRQGSLAFT
LFGCILAHGELRNNKLNQLSVNLWNLSHKHSYCDTRTSVQTLESIKHQAQQPGMAHISDM
VQRLTLQSRT
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtgcagtggcactctcgtagtcgcaggtatgaggctgaactgcagagctgt
ggcctggaggtcgccccagtggagtttggcgactaccatcccctgaagtccgtcactgtg
acagactccaagtcgctgaggggagcacgtaaaggcagcacttcctcctcctccaactct
gtggcaccagatcccctgagctccatgctggatggaacagaccccctgtccatgtttgct
tcagcctccgccagtgagccccccctaaccctctcacatagcagctccactggggacttg
ggtagagggaagaggatggagatggaggatgaggttggagtgaactttgagccctggtca
tccaaacggggagaaatcctggccaggttcactaccacagagaagctctccattaatctc
ttcatgggctcagataaaggtaaggctcccagtcctgggtcctctgctgtatcggaaaag
gtacgaactcgcctagaggagctggatgatctggaagaggattctcagagggagctgctg
aacctgtcccagcaggactatgtgaactatatcgagaagctcaacaaatctctaaaagag
gcctgggcctctgaccagaaggtcaaggccctcaagatcgtcatccagtgctccaagctg
ttgtcagacaccgctgtgattcagttctaccccagcaagtttgtgctcatcacagacatt
ctggatatctttggacagctggtttatgagaggatctggtccatgtgctctgaccctcgc
tccctaccagatccttctccagactccttcacagctgatgtgaatgtgaatgacacggcc
aagaagacctgcctcaactggttcttcaaaatcgcctccatcagagaactcatcccacga
ctatatgtagaagtagctctcctgaagtgtaaccgtttcttaaccaagtgtgggatccag
gagactctacctcgcctcacagctatgatccgggggataggggaccccctggtggctgtg
tatgcccgggcctacctctgtaggattgggatggaggtggctcctcacctgaaggactgc
ctgaacaaaaacgtatttgacctgctgggaatgttccgtcagatccatggcgacagtgtc
cagaaccaactggtcctgcagagggtggagatcccagtctacctgaccctctactccccc
gccatccactggatcctgcagtgtgtctcctacagagcaccagagcccctgctaactgag
atgatggagaggtgcaaaaagattgggaataatgccctgctgctgaactctgtgatgtgg
gcgttcagggcggagtttatcgcgacgagagccactgacttcatcggcatgatcaaggac
tgtgatgaggcaggattccccaagcacctgttgtttggctctctgggccgcagtctggcc
tgtgctgaccctcctgaagcagaaaggctgcccatcctcaacgaggcctggaaggtcatc
accaaagtgcacagtccacaggattacatcaactgtgctgagatctgggtggagttcacc
tgtcgtcacttcactaaacgtgaggtcaacactgtgctctctgacatcatcaagcacatg
acaccggatcgggcctttgaggatgcctatgctcagctccagtctgtgataaggaagatc
ctcatctactttcatgacttctctgtcctcttctccatggagcgtttccttcctttcgtg
gacatgttccagaaggacagcgtcagggtggaggtgtgtcgctccatcatggacgtcttc
atcaaacaccaacaggagcacactagagaccctgttatcctcaatgcactactgcacatc
tgcaagaccatgcacgactctgtcaatgcgctgactctggaggatgagaagagatctcta
gccttactgatcaatggcttcatatgcatggtgtcgtttggtcgtgactttgagcagcag
ctgagtttctgtgtggaggcccgggccacgttctgtaacctggagccagtgctggtgcag
ctcatccacactgtgaacctgctggccatggagacgaaccgtgtgatgaggggcagccac
tcccacaagactgctgcttttgtcagggcatgtgctgcatacagcttcatcaccattccc
tccctcagcagcatcttcagccgcctcaacctctacctgctgtctgggcaggtggccctg
gccaaccagtgtcttttccaggcggatgcattcctgaaggcagcggtcagtgtgttgcca
gaggttccacgcagtatctgtatcgaaggcaaactgcgctcctctgagggcttcctgctt
gacttcatcaataacttcctgtcagcactactagttgtgccggaccacccagaggcaggg
gtgttgtacctggtgcgtgggctgctcaacatggtacaggactacacctgggaggagaac
agcgacgccaagttccatgtctacatcagcgccctgccactactggctgccatgagtcag
gagacctacctctactccatccccaaagtggactctaatgaaacactttatggaggagat
cccaagtttgtggcagagatcaacaagttatgtgaaactctgattggacatgtgctggac
catctcaagagcttgggtagagatgagagtgttcgtagacagggtagtctggccttcact
ctgtttggctgcatcctggctcatggggagctacgcaacaacaaactcaaccagctgtct
gtcaatctgtggaatctgagccacaagcacagctactgtgacacacgcacctctgtgcag
acactagagtccatcaagcaccaggcccaacagccaggcatggctcacatctcagacatg
gttcaacgcctcactctgcagtccaggacctga
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