Coregonus clupeaformis (lake whitefish): 121538372
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Entry
121538372 CDS
T08357
Symbol
cntn3a.1
Name
(RefSeq) contactin-4 isoform X1
KO
K06761
contactin 3/4/5/6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121538372 (cntn3a.1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
121538372 (cntn3a.1)
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Contactins
121538372 (cntn3a.1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
Others
121538372 (cntn3a.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
V-set_CD47
Pur_ac_phosph_N
Tissue_fac
Herpes_gE_N
Fn3_nematode
Nuc_sug_transp
Motif
Other DBs
NCBI-GeneID:
121538372
NCBI-ProteinID:
XP_041702237
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All DBs
Position
24:26360734..26466669
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AA seq
1037 aa
AA seq
DB search
MELLWKLMLLLSFAEFLAGNNVLLRPVFTKQPGSVVFPLYPTETSREVVFSCEAQGHPPP
FYRWKLNDSFIVPRSGSRYALTGGNLRISHLNKEEDVGIYQCLATNSFGTIVSREASLHI
AYLENFKTQSRSPVRVREGQGVVLLCGPPPHSGELTFTWIFNEYPSFVMQDTRRFVSQKT
GNLYIAMVEPSDVGNYTCVVTNTVTKSSIQGPPTPLVLRIDGVMGEYEPKIEIQLPDIIP
VAKSSTVKLECFALGNPVPTISWRRVDGVAVGRKVDVNKASGVLEIPYFQQEDAGLYECV
AENSKGRNSAKGKLSFYAPPHLIEKPQDAQKPIDDTLVWECKASAKPKSSYRWLKNGEPL
DPMEMENQVSLFQDRVQVNNGVLTISSLKLADIGMYQCVAENKHGRVLTNTELRVIAVAP
DFSQNMLKPQTLARQGGDVLIECRPKMSPHGMISWRKGKEALRESHRVSVLDNGSLRIAN
VTKMDAGLYTCVARNQFGVASSAGSLLVKETTVITSPAGHLDVTVGESIVLPCQVSHDHT
LDLKFTWFFNEQLIHFGNHGGYFEKVGGRSAGDIMIRNIQLRHAGKYTCAVQTKVDSVSI
ATDVVVRGAPGPPVDFQVTEMTDSTASLSWGPGPDNHSPVLTHNIQARTTFSLGWQGVIT
VPELLGGKQLTATVIDLSPWVEYEFRVLATNAIGTGEPSKPSKKARTKDMPPKITPSRVN
GGGGGRSELVITWEPVPEELQNGPGFGYVVAFRPQGAQGWMQAAVTSPDASRYIFKNESI
APFSPFHVKVGVYNNKGEGPFGPVTTIYSAEEEPSRAPGRVRARSVSASEMEATWKALPW
SNNRRRILGYELRYWGERERQETASVIRTMGNRTSVVIRGLEGGRTYFISLRAYNSAGVG
PHCATVNVTTKKPPPSQAPVKIMWNTSNSKVILKWDHVRALENESEVTGYKVMYTKDRHS
RPNVVETNTTSLELALPVNEDYVIQIKPFSEGGEGSSSRQITIPRIAGSMAIGAAPESSA
LSMVNMLALYFTARTFL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggagttgctatggaaactgatgctgctgctttcattcgcggagttccttgcaggaaac
aacgtcctgctgaggcctgtgttcaccaaacaaccaggcagtgtggtgtttcccctctac
cccaccgagaccagcagagaggtggtgttcagctgtgaggcccagggacatccacctccc
ttctacaggtggaagctgaatgactccttcattgtacctagatcagggtcacgctatgcc
ctcaccgggggcaacctacgaatcagccatctgaataaagaggaggacgtcgggatctac
cagtgtctggcaaccaactctttcggcaccatcgtcagcagagaagctagtctacatata
gcttacttggagaatttcaagacacagagtcgaagtccagtgagggttcgtgagggccaa
ggagtggtcctactatgtggcccaccaccccactctggagagctcaccttcacctggatc
tttaatgagtacccatcctttgtgatgcaagacactcgtcgcttcgtatctcaaaagacg
ggtaacctgtacattgccatggtggagccatcagacgtgggcaactacacctgtgtggtg
accaacacagtcaccaaaagtagcattcaaggcccccccacccctttagtgctacgtatc
gatggtgtaatgggtgaatatgagccaaagattgaaatccagcttcccgacatcatacct
gtggccaagagttccactgtcaaactggagtgttttgcactgggaaacccagttcccacc
attagctggagaagagtggatggggtagcagttggccgaaaggtggacgtgaacaaggcc
agcggagtgctcgagatcccctacttccagcaggaagatgcaggcctgtatgaatgtgtt
gccgaaaactccaaagggaggaactcggctaaaggaaagctctctttctatgctccccct
cacctgattgagaagcctcaggatgcacagaagccaatcgatgacaccctggtgtgggag
tgcaaggccagtgccaaaccgaagtcctcgtaccgatggctgaaaaacggcgagcctctg
gacccgatggagatggaaaaccaggtgtctctttttcaggacagagtgcaagtgaacaac
ggagtcctgaccatcagcagcttgaagctggccgatattgggatgtaccagtgtgttgca
gagaataagcatggccgggtcttaaccaacactgaactccgagttatagctgtagcccca
gatttctcccagaacatgctgaagccccagaccctggccaggcaggggggtgacgttctg
attgagtgcaggcctaagatgtctccacatgggatgatctcctggaggaaggggaaagaa
gcactccgagagagccacagagtctcagtgttggacaatggaagtcttcgaatagcaaac
gttaccaaaatggatgccggcctctacacctgtgtggcaaggaaccagtttggagtggca
agcagtgctgggagtcttttggttaaagagacaactgttatcaccagcccagctgggcat
ttggacgtgacggtgggcgagagcatcgtcctcccctgccaagtctcccatgaccacacg
ctcgatttgaaattcacctggttcttcaacgaacagctcatccactttggaaaccacggg
ggctactttgagaaagttggcggacgctcagccggtgacatcatgatccgtaacattcag
ctgaggcatgctgggaagtatacctgtgctgtccagaccaaggtggacagtgtctccatc
gccaccgatgtggtagttagaggagctccaggcccacctgtggacttccaggtgacagag
atgacagacagcacagcgtctctgtcctggggaccaggtcctgacaaccacagcccagtc
ctcacccacaacatccaggcccgcacaactttttccctgggctggcagggagtcatcaca
gttcctgaacttcttgggggcaaacagctgacagccactgtcattgacctcagtccgtgg
gtggagtatgagttcagagtgctggcaaccaacgccatcggaacaggagagcccagcaaa
ccttccaaaaaagcccggaccaaagacatgcctcccaagatcacaccatccagagtgaac
ggaggtggtggtggtcgctcagagcttgtcatcacttgggagcctgtccctgaagagcta
cagaatggcccaggatttggctatgtggtagccttccgacctcagggggctcagggctgg
atgcaggctgcagtcacctcccccgacgcctccagatacatcttcaagaacgagagcatc
gctcccttctctccttttcatgtgaaagtgggcgtgtacaataacaaaggggagggaccc
tttgggccagtgaccaccatctactctgcagaggaagagcccagcagagccccaggtagg
gtgcgggccaggagtgtgtcggcatcggagatggaggccacctggaaggccctgccctgg
agcaacaacaggagacgcatcctgggctacgagctgaggtactggggtgagagggagaga
caggagacagccagtgtgatcaggaccatgggtaaccggacgtctgtggtgatcagaggc
ctggagggcggcagaacctactttatctccctccgagcctacaacagcgccggggtgggc
cctcactgtgccacagtcaatgtcaccaccaagaaaccacccccaagccaggcaccggtg
aagatcatgtggaacacctcaaactcgaaggtcatcctcaaatgggatcatgtcagagct
ctggagaacgagtccgaggtcactggttacaaagtgatgtacacaaaggacagacacagt
cgtcccaacgtggtcgaaaccaacaccacttctctggagctggcgctaccggtcaacgag
gactatgtcatccagatcaaaccattcagcgagggaggagaggggagtagcagtagacaa
atcactattcccaggatagcaggttcaatggccattggtgcagcccccgagtcatcagcg
ttatccatggtcaatatgctagcactctatttcacagccaggacgttcctatga
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