Coregonus clupeaformis (lake whitefish): 121538391
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Entry
121538391 CDS
T08357
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121538391 (clstn1)
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Cadherin related
121538391 (clstn1)
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Toxin_R_bind_N
Cadherin_pro
V_ATPase_I
Cadherin_C_2
EphA2_TM
PFF1_TM
TMEM132_C
FAM176
Motif
Other DBs
NCBI-GeneID:
121538391
NCBI-ProteinID:
XP_041702269
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All DBs
Position
24:24812830..24893829
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AA seq
984 aa
AA seq
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MQIRRYKHFASVVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFTEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTVDKDGFIKNTEKLNYSKERMYKLTVTAYDCG
KNRASEDVLVKINIKPTCKPGWQGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQANI
ELETNHIGKGCDRDTYSEKSLHKLCGASAGAVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGVVSTNLKEPFTVSVWMRHGPGAREKETILCNSDKTEMNRHHYSLYVH
NCHLILLLRQDPAETENYKPAEFHWKLDQVCDKEWHHYVLNVEFPSVALFVDGTTFKPFL
VTEDYPLHSSKIDMQLTIGACWQDNSGHDNDNETVSEPSTGGNARMSQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVAFNPNQSSLTVEGDDIEAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNEETCISVPEAVGYVMVLQPEEPKISLSGIDHFAR
GAAEFESPEGVTLFPELRIVSTITREVEAETEPEATEATEGAEDDPTVQETVVSEEIMHN
LDTCEVTALGDELDGEHETLEVDQAQVQQRGLEMTSSNLGLVLTGVNTMANYEQVLHLIR
YKNWHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPMDHANNAMVQPNFINPVH
HASVDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRSAHQRTMRDTEGG
KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDEEA
GEPEDQQGASRQQQLEWDDSTLTY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcagaaggtataaacattttgcatccgttgtcggattggtcctcggactatta
tgtgcggtggaggcagctaaagttaataagcacaaaccatggatcgagacgacttatcat
ggcatcgtaacagaaaatgacgacaaagtacttctggaccctccacttatcgccctggac
aaagacgccccactgcgctacgcagaaagttttgaggtgaccttcaccaaagaaggtgag
atttgtggcttcaggatccatgggcagaatgtcccttttgaggcagtggtcctggacaag
tccacaggcgagggggtcattcgggccaaggacaagctggactgcgaactccagaaggag
cacaccttcaccatccaggcctacgactgtggagagggccctgacggagccaacatgaag
aaatcccacaaggccactgtccacatccaagtgaacgacatcaacgagtattccccagtg
ttcacggagaagtcctacaaagccacggtcatcgagggtaagaagtacgacagcatcctg
aaggtggaggcagtggacgccgactgctcgttccagtttagccagatctgcaactatgag
atcgtcaccccagatgtgcctttcaccgtcgacaaggacggcttcatcaagaacacagag
aagctgaactacagcaaagagcgcatgtacaaactgacggtgactgcctacgactgtggg
aagaaccgcgcctcagaagatgtgctggtcaagatcaatattaagcccacctgcaagccc
ggctggcaaggcttcaacaagaggattgagtacgagcctggcacaggcagtctggccctt
ttccctagcatgcacttggagacctgcgaggagccaatcacctccatccaggccaacatc
gagctggagaccaatcacatcggaaagggctgcgaccgagacacctactctgagaagtcc
ctgcacaagctatgtggcgccagcgctggcgcggtggaattactgcctgcaccaagcagc
tctgccaactggacggtgggtctgcccacggacaatgggcatgacagcgaccaggtgttt
gagttcaacggcacgcaggccatcaaggtgcccgagggcgtggtgagcaccaacctgaag
gagcccttcaccgtctctgtgtggatgaggcacggccccggggccagggagaaggagacc
atcctctgtaactcggacaagaccgagatgaacagacaccactactccctctacgtccac
aactgtcacctcatcctgctgctgcgtcaggaccccgccgagacggaaaactacaaacca
gcagagttccactggaaactggaccaggtgtgtgacaaagagtggcaccactacgtgctg
aacgtggagttcccctccgtggctctctttgtggacgggaccaccttcaagcccttcctg
gtcaccgaagactaccccctgcactcctccaagatcgacatgcagctcaccatcggggcc
tgctggcaagacaactcaggacatgacaatgacaacgagacagtctctgagccttccaca
ggcggcaacgctcgcatgtcccagtttttccgggggaatctggccggcctgatgatccgg
tcgggaaagctggagaacaagaaggtgatcgactgcctgtacacctgcaaggagggcctg
gatgtgcagctgcctgaggaggtggcctcagccgtcaaggtggcgttcaaccccaaccag
tcgtctctgaccgtggaaggcgacgacattgaggctttcgacaaggtcatgcagcacatc
tcctacctgaactcacgccagttccccacccccggcattcgacacctccgcatctccacc
accgtcaagtgcttcaatgaggagacgtgcatctcggtaccggaagcagtgggatatgtg
atggtgctgcagcccgaggagcccaagatcagcctgagtggcatcgaccactttgcccgc
ggcgctgcagagtttgagagccctgagggcgtgactctgttccccgagctgcgcatcgtc
agcaccatcacccgcgaggttgaggctgaaaccgagccagaggccaccgaggccacagag
ggggcagaggacgaccccacagttcaagagacggtagtgtcggaggagatcatgcacaac
ctggacacatgtgaggtgacggcgctgggcgatgagctggacggagagcatgagaccttg
gaggtggaccaggcccaggtccagcagcgcggcctggagatgacctcctccaacctgggc
ctcgtcctgacaggcgtcaacaccatggccaactatgagcaggtcctgcacctgattcgc
tacaagaactggcacacagaggctctctttgacaggaagttcaagctggtctgctccgaa
ctcaacggccgctacatcagcaacgacttcaaggtcgaggtcaatgtgatccacacagcc
aaccccatggaccatgctaacaatgccatggtgcagcccaatttcatcaatccagtgcac
cacgcctctgtggacctgtccggacacaacctggtcaacgctcaccaggcttcagtggtc
cccagcgccgccaccatcgtcattgtggtgtgcgtcagcttcctggtgttcatgatcatc
ctgggcgtgttccggatccggtcggcccaccagcgcaccatgagggacacggagggcggc
aaggagaatgagatggactgggacgactctgccctcaccatcacagtcaaccccatggag
acttacgaggaccaacacagcagtgaggaggaggaggaagaggaggaggagagcgaggaa
ggtgaggaggaagacgacatcacaagtgccgagtcggagagcagcgaggatgaggaggct
ggagagccagaggaccagcagggtgccagcagacagcagcagctggagtgggacgactcc
acactcacctactaa
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