Coregonus clupeaformis (lake whitefish): 121538409
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Entry
121538409 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM33-like isoform X4
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121538409
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121538409
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121538409
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
121538409
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121538409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
121538409
NCBI-ProteinID:
XP_041702308
LinkDB
All DBs
Position
24:24384975..24413554
Genome browser
AA seq
1190 aa
AA seq
DB search
MADNKGEEDIESASKLDSEPRGEDSGDPELKDVNSVIVIEPDSKEGEDLQSQDNVSQMST
HANVSGGGDASSNSAGAGGEGSTSSSPVGNTNGGTTESSGAGDIAGTSLAFTTEMSPPPT
VPPANPVTPINLMDTCAVCKQSLQTRDCEPKLLPCLHSFCLKCIPQPERQVTVQVPGPNG
QPDTHIVNVMRCIVCCQDCKQSDIIDNYFVKDTTEASNTSDEKSAQMCTSCEDNADTIGF
CAECGEWLCKTCIEAHQRVKITKDHKIRKKEDVSEESVGASGQRPVFCPVHKQEPLKLFC
ETCDTLTCRDCQLLEHKEHRYQFLEEAFQNQKGFIETHMAKLQEKKTYVHYSHSHVTSRL
KEVTETHRKVEHEIKIAVFTLINEINKKGKCLLQQLESVTKERSMKLFSQQTDIANLARQ
ILHVLNFTHSAINSGSSTALLYSKRLIIYQLRKVLKAGLEPVPQANGSVRFFCDPTFWAK
NVVNLGNLVIEKMPQAQHPPNIMVGPISPGHGHPGHGKHPGQINLAQLRLQHMQQQAFAQ
QKQQQQQQQQHQQQHQQQHQQRIQEQMRIASQMSQQHPRQGGPPMVQQQPPRLISMQAQQ
RGPMNGGPLMYPPHHLRLAPGQGRMPSPSAQPRMPNGQQYPPMMQPQLQRQHSNPGHAGP
FPVASLHNVTPANPTSPTSASMASAHAHRGPASPIVGAIELIPSVTNPENLPCLPDIPPI
QLEDAGSSSLDALLSRWISASTYPQLGLWPPVDMNPSPGLSTHSPGSSGLSNSHTPVRPS
STSSTGSRGSCGSAGRPVPASAPMEQQVKVKQEPGIEKECGFSGTTSSNVKTERGKDGGR
SACMMSSPEISRTPPLPVLGSMASASSVQDALKKLGEHVKTEPQDQEACSGANGPSKAPS
TSPSTKASDAPLTNSKGAASAAVRTPRTAQGTNQSGAGGKDDDPNEDWCAVCNNGGELLC
CDRCPKVFHITCHIPTLKCSPSGEWMCTFCRSLASPEMEYQPDDEPRGEKDNSEQGLSPE
DQRRCERLLLYVFCHELSEGFQEPVPPSIPNYHKIIKKPMDLTLVKQKLQLKHVQHYQSP
IEFVSDVRLVFSNCAKYNEMSRIIQVYDEEKQSNVQADSEVAQAGKAVSLYFEERLLELY
PEESFPEVPEEPEAPVGEGEEADLTEDSEDEFVQPKRKRLKTDEKMLHIK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaacaaaggcgaagaggatatcgagagcgcttccaaattagattcagaacct
cggggagaggatagcggagaccccgaattgaaagatgtgaattcggtgattgtcatagag
cccgattcgaaagaaggagaggatttacaatcccaagataatgtttctcagatgtctaca
cacgctaacgttagcggaggaggggacgctagcagcaacagcgcgggcgcagggggggaa
ggcagcactagcagcagtccagttgggaacaccaatgggggtacaaccgagtcctcgggt
gctggggacattgctggaacctcactagcattcacaacagaaatgtctccaccgccgacg
gttccaccagccaaccccgtcaccccaataaaccttatggatacgtgcgctgtgtgtaaa
caaagtctccagacccgtgactgtgaacccaaactcttaccgtgtcttcattcattttgc
ttgaaatgtatcccccagccagagcgacaagttaccgtacaggtgcccgggccgaacgga
cagccagacacccacatagtgaatgtgatgcggtgcatagtttgttgtcaagactgcaaa
cagagtgacatcattgacaactactttgtcaaggacactaccgaggcctccaacacttca
gatgaaaaatctgcacagatgtgcaccagttgtgaggacaacgcagataccatagggttc
tgtgcagaatgtggagagtggttgtgcaagacctgcattgaggctcaccagagggtcaaa
atcaccaaggaccacaagatccgcaagaaagaagacgtctctgaggagtctgtaggtgcg
tcgggtcagagacctgtgttctgtcccgtccacaaacaggagcccctgaaactcttttgt
gaaacctgtgacacactcacctgtcgggactgccaactgctggagcacaaggagcacagg
taccaatttctggaggaggccttccagaaccagaaaggcttcatcgagacacacatggcc
aaactgcaggagaaaaagacctacgtccactactcacactctcacgtgacaagcaggcta
aaggaagttactgagacccataggaaggtggagcatgagatcaagatagccgtgttcact
cttatcaacgaaatcaacaagaagggcaagtgtttactgcagcagcttgagagtgtgact
aaggagaggagcatgaagctgttttcccagcagacagacatcgctaacctggccaggcag
atcctccacgtgctcaacttcacccactctgccattaacagcggcagcagcaccgcgctg
ctttacagcaagaggctgatcatctaccagctgcgcaaggttctgaaggctggactggaa
ccagtgcctcaggctaatggttctgttcgcttcttctgtgaccccacattctgggccaag
aatgtggtcaacctagggaacctggtaatcgagaagatgccccaggctcagcaccctccc
aacattatggtgggacccatctccccgggccatggccacccaggccacggaaaacacccg
gggcagatcaatctggctcagctccgcctgcagcacatgcagcagcaagccttcgcccag
cagaaacaacagcaacaacaacagcagcagcaccaacaacagcaccaacagcagcaccaa
cagaggatccaggagcagatgcgtatcgcttcccaaatgtcccagcagcaccccaggcag
ggtggacctccgatggtacagcaacagcccccgcgcctcatcagcatgcaggcccagcag
aggggccccatgaacggcggtcccctcatgtaccccccccaccacctgcgcctcgccccg
ggacagggccgcatgcccagccccagcgcccagccacgcatgcccaacggtcagcagtac
cccccaatgatgcagccccagctgcagagacagcattctaacccaggtcatgctggaccc
ttcccagtggcctctctccacaatgtgaccccagccaaccccaccagtcccaccagtgcc
agcatggccagcgcccatgcccaccgtggccccgccagccccatagtgggcgccatcgag
ctcatcccatccgtcaccaacccagagaacctgccctgcctaccagacatccctcccatt
cagctggaagacgcgggctccagcagtctggacgccctcctgagtcgctggatctcagcc
agcacataccctcagctaggcctgtggccccccgtggacatgaatccctcacccggactc
tccacacactcgcctggctcctcaggcttatcaaactcccacacacccgtacggccatcc
agtacatccagcacaggaagcaggggcagctgtggctctgcggggaggccagtgccagcg
agcgccccaatggaacagcaggttaaagtcaagcaggagcccggaatcgagaaggagtgt
ggcttctcaggaaccacctcctccaatgtcaaaactgaacgagggaaggatggagggagg
agtgcgtgcatgatgagtagtcccgagatcagccggactccccctctccccgtgctgggc
tccatggcttccgcctcctctgtccaggacgccctcaagaagttgggggagcacgtcaaa
actgagccccaggaccaggaggcctgcagcggggccaacgggcctagcaaagcccctagc
accagcccatccacaaaggcctcagacgccccactgaccaacagcaagggagctgcgtct
gctgccgtgcgcactccacgcactgcacaggggaccaaccagagtggggcgggagggaag
gatgacgaccccaacgaggactggtgcgccgtgtgcaacaacgggggagagctgctttgc
tgtgaccgctgccccaaagtcttccacatcacctgtcacatccctaccttgaagtgctct
ccgagtggagagtggatgtgcacgttctgccggagcctggccagcccggagatggagtac
cagcctgacgacgagcctcgtggcgagaaggacaacagtgagcagggcctgagtcctgag
gaccagaggaggtgtgagcgcctcctgctgtatgttttctgccatgagctcagcgagggg
ttccaggagcctgtccctccctctatccctaattaccacaagatcatcaagaagcccatg
gacttgaccctggtaaaacagaaactacagttgaagcatgtccagcactaccagagcccc
atagagtttgtctcggacgtgcgcctggtcttcagcaactgtgccaaatacaacgagatg
tctcgaataatccaggtttatgatgaggagaaacagagtaatgtgcaggcggactcggag
gtggcacaggcagggaaagcagtgagtttgtactttgaggagaggctgctggagctctac
ccagaggagagttttcctgaggtaccagaggagcccgaggccccagttggagagggagag
gaggcagatctcacagaagactcagaggatgaatttgtgcaacctaaacgcaagcggtta
aaaacagatgaaaagatgctccacatcaagtga
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integrated database retrieval system
