Coregonus clupeaformis (lake whitefish): 121538546
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Entry
121538546 CDS
T08357
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121538546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121538546
03036 Chromosome and associated proteins [BR:
cclu03036
]
121538546
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121538546
Coactivators
SAGA/TFTC/STAGA complex
121538546
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121538546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121538546
NCBI-ProteinID:
XP_041702601
LinkDB
All DBs
Position
24:42419784..42435395
Genome browser
AA seq
970 aa
AA seq
DB search
MRLTSERSRVKMAAGSDLLDDVFFNTEVDEKVVSDLVGSLESELTGSGRGNSAVRIQAAA
NHIGNSNVQDSKMGLSQELAKPGTSVQGGVINSTRSTMDTAAGTTAAGSSMTAGHSQSKT
GTAGGVLTVVPDHREGIGKTGAAGVVQTLNGSNVVINSHNLVSSASSTVPAVTVVNNGPG
SVVKGNVILPSTSSTVIQTSLMHNAVTSTVISSQPSVLNSVPTVTLVRPPMQNPGTVTSQ
SGRNTFLTSTVNVAHPACSGAQVNKSETPKTIIQTTAQVTGTTTAALGKSPVLQNVRTSI
PSTIATSPGGIRAIAPQVLAPILPQPQQNAPNIQNIQLPPGMVLVRSESGQLLMIHQQTL
AQMQAQSQSQSAMTPRPATPTSTPPVQITSVQAPGMPLMARQVTPTTVTKQGSPAQSTVQ
ATTTLQRPPVLQQNTIMLGGAAATPSQAPVQPGSAAAAVTQRAGTPGTTGAPGTPTTITE
TLENVKKCKNFLSTLIKLASSGKQSSETTASVKDLVKSLLEGKIEAEEFTSRLYRELNSS
PQPYLVPFLKRSLPALRQMTPDSTAFIQQSQLPQASAQPASSSTALTSVVLGGTAAAQRP
PLNSTTSPGAKGTLHQSPVISLAQTPHSKPGLMVPQQQGAMASPQVTLAQAPMVTLRGQP
HSRIMGQPQVVKQLQTVPVVKQALASGAKGTLGLQSMLSVAQKNKLKEASGGTFKDDDDI
NDVASMAGVNLSEESARILATNSELVGAVTRSCKDEAFLYTSSLTRRVQEIGRRFGVTDL
GPEVINYVSHATQQRLQNLLEKVTEVAQQKNITFKEDDKYEQVSDVRAQLKFFEQLDQME
KQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGP
RKKRKMDSPVSGAGAEGSGSGPSLSGGSSSGGSRPQRQRITRVNLRDLLFCLENERETSS
SHLLYKGFLK
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcacgagcgagcgtagcagggtaaagatggcggcgggctcggatttgctggat
gatgttttcttcaacactgaggtggacgagaaagtagttagtgatctagttggatctttg
gagtctgagctcaccggatcgggtcgcggaaactctgcagtcaggatacaggctgccgca
aatcacatcggcaactccaatgtccaggacagcaaaatgggactttcacaagagcttgct
aaaccagggactagcgtccaagggggtgtcattaatagtacgaggtccaccatggataca
gcggcgggaacgacggctgcgggctcgagcatgacagccggacacagtcagagtaagacg
gggacagccggtggtgtgttaacagtggttcccgatcaccgggaagggataggaaaaact
ggggcggctggtgttgtacaaactttaaatggaagtaacgttgtaataaactctcataat
ttggtgagctcggcaagcagcacagtgcccgccgtcacggttgtcaacaacggaccaggc
tccgtggtcaaaggaaacgtaatcttaccctcaacttccagcactgtcattcaaacctct
ctaatgcacaatgctgtcacttcaactgtaatatcgtctcagccgtctgttctaaacagt
gtgcccactgtcacgctcgtgaggccgcctatgcaaaaccccggaacagtcacatcgcag
agcgggagaaatacctttctgacatcaactgtcaacgtcgcccaccctgcatgttcagga
gcacaagtcaacaagtcggagacgccaaaaacgatcatacaaacgacagcacaggtgacg
gggacgacgacagcagctttagggaaaagcccggttttacaaaatgtaaggacctccatc
ccatcgactattgctaccagtcctggtgggataagggcgatcgcgcctcaggtgttggcc
ccaatacttccgcagccccaacagaatgctccaaacatccaaaacattcagctcccccca
gggatggtgttggtgcgcagtgagagtgggcagctgttaatgatccaccagcagaccctg
gcccagatgcaggctcaatcccagtcccagagcgccatgaccccacggccagccaccccc
accagcactccccctgtccagatcacctctgtacaggctccagggatgcccctcatggcc
cgacaggtgacccccaccaccgtcactaagcagggctcccctgctcagagcactgtccag
gccaccaccaccctccagaggcctcctgtactacagcagaacaccattatgctgggtggg
gcagctgccaccccaagtcaggccccagtgcagcctggctcggcagcagcagcagtcacc
cagcgagcagggactcccggaactactggggcaccaggaactcccactaccattacggag
accctggagaacgtgaagaaatgcaagaacttcctttcaacgctgatcaagctggcatcc
agcgggaagcagtcatctgagaccacggccagcgtcaaggacctggtcaagagcctgttg
gagggtaagattgaagcggaggagttcaccagtcggttataccgggagctcaactcctct
cctcagccatatcttgtgcctttcctcaagaggagtctccctgcactgcgtcagatgacc
ccagactcgacagccttcattcagcagagccagctgccccaggccagcgcccagcctgcc
tcctcctccacggccctgacttctgtggtgctggggggcacggccgccgcacagagaccc
cctcttaacagcaccaccagccccggggccaaggggaccctgcaccagtcccctgtcatc
agcctggcccagacacctcacagcaagcctggcctgatggtgccccagcagcagggggcg
atggcgagtcctcaggtaactctggcccaggcgcccatggttactctccgaggccagccc
cacagtcgcatcatgggacagccgcaggtggtcaaacagctacaaacagttcctgtagtg
aaacaagctctagcatcaggggccaagggaacactggggctccagtctatgctctctgtt
gcacagaagaacaagctgaaggaggcaagcggaggaaccttcaaggatgatgatgacatt
aatgacgtggcctccatggctggagtcaacctgtcagaggagagcgcccgtatcctggca
accaactctgagctggtcggcgcggtgacccgctcctgtaaggacgaggccttcctctac
acctcctcactaacccggagagtacaggagatcggtaggaggtttggggtgactgacctg
gggccagaggttatcaactacgtttcccatgctacacagcagcggctgcagaacctgctg
gagaaagtgacggaggtggcgcagcagaaaaacatcaccttcaaggaggatgataagtat
gaacaggtgagtgatgtgcgagcccagctgaagttctttgaacagctggatcagatggag
aaacagaggaaggaggagcaggagagggagatcctgatgaaggctgctaagtctcgatcg
cggcaagaggacccagagcagcttcggctcaaacagaaggccaaagagatgcagcagcag
gagctgaatcagatcaggcagaaggaggccaacatgacggccctggcagccatcggcccc
aggaagaaacggaaaatggactcccctgtcagcggagccggggctgagggctctggctct
ggtccctctttgtcaggtgggtccagtagcggaggctccagacctcagcgccagcgcatc
accagggtcaacctcagggacctgctcttctgtctggagaatgagagggaaaccagcagc
tcgcacctgctctacaaaggcttcctcaaataa
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