Coregonus clupeaformis (lake whitefish): 121538558
Help
Entry
121538558 CDS
T08357
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1-like
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121538558
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121538558
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121538558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121538558
NCBI-ProteinID:
XP_041702619
LinkDB
All DBs
Position
24:complement(41915860..41928244)
Genome browser
AA seq
702 aa
AA seq
DB search
MATNGTKTDGQVTELNEVATNVKPKSLDVKSEKTKTDLPERETWGGRFDFLLSCVGYAIG
LGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGMPLFLLETALGQYTSIGGLGVWKLAPVFK
GVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTDLPWSSCGNSWNTDKCYSNYSIVDNT
NLTSAVMEFWERNMHQMTDGLEKPGQIRAPLAITLAIAWVLVYFCIWKGVSWTGKVVYFS
ATYPYFMLFILFCRGVTLPGAMDGILFYITPNFEKLKESEVWLDAATQIFFSYGLGLGSL
IALGSYNPFNNNVYRDSIIVCCINSFTSMFAGFVIFSIVGFMANVTKRPIQEVAASGPGL
AFLAYPEAVTQLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRRELF
IAAVCLVSYLIGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWFYGVNKFYDN
IQEMIGYKPCIWWKLCWVCFTPLIVAGVFLFSAVQMVPLTLNNYVFPAWGQGVGWLMALS
SMVLIPGYMVYMYFGLKGTWKERLRIMFQPPAVVRRPQENGPETVVAETNIASPSNAANP
TSPSNPASPANPTAASPVAAAPTNPAPPAVPATLASPVNPTSPIVPTVPTVPTVPATPAN
PTSPTSPTSPPPNPVSPTAKETAIPPPNIVSSTNLTNTEANV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacggcaccaaaacagatggacaagtaacagaacttaacgaagtggcaact
aatgtcaaacccaagtcactggacgtgaaaagcgaaaagacgaaaacggatcttcccgaa
agagaaacatggggagggagattcgatttccttctgtcgtgtgtaggttatgcaattgga
ctcggaaacgtatggagatttccatatctatgtggaaaaaacggtggaggagccttcttg
atcccctattttttgacactcatattcgctgggatgcccctgttcctgctggagaccgct
cttggtcagtacacctcaattggtgggcttggagtctggaaactggctcccgtgttcaaa
ggtgttggccttgcagcagctgtcctgtccttctggctgaacatttattacattgtcatc
atagcctgggccatttactatctctacaactcctttaccactgatcttccatggagctca
tgtggcaattcatggaacacagacaaatgttactcaaactacagtattgttgataacacc
aatcttaccagtgcggtgatggagttttgggagcgcaacatgcatcaaatgaccgatggc
ttggaaaaaccagggcagatccgagcgccactggcaataacactggccatcgcttgggtc
ctggtgtacttctgtatctggaaaggggtgagctggactggcaaggttgtgtacttctct
gccacgtacccctatttcatgctattcattctgttctgccgtggagttactttacctggt
gctatggatggaattctcttctatatcacccctaactttgaaaaactcaaagaatctgag
gtatggctggatgctgccactcagatattcttctcctacggtttgggactgggctcactg
atagctcttggcagctataacccttttaataataatgtttacagagactctatcatagtg
tgctgcatcaactccttcaccagcatgtttgctggctttgtcatcttctctattgtgggc
ttcatggcgaacgtgactaagaggcctatacaagaagttgcagcttcaggtccaggcctg
gctttcctggcctaccctgaggctgtgacccagctgcctgtctctcctctctgggctatc
ctgttcttctccatgctgctgatgctggggattgacagtcagttctgcacagtggagggc
tttatcacagctctggtggatgagtttcccagggcactgaggggcaggagagagctcttc
atcgctgctgtctgcctggtatcgtacctgatcggcctgtccaacatcacacagggaggc
ctgtacgtgttcaagctcttcgactactactctgccagtgggatgtgtctcctcttcctg
gtgttcttcgagtgcatctccatatcctggttctatggtgtgaacaaattctatgacaac
atccaggagatgattggctacaagccctgtatatggtggaagctgtgctgggtctgtttc
acccctctcatcgtggctggggtgtttctgttcagtgcagtccaaatggttcctctcacc
ttgaacaactacgtgttccctgcctggggccagggagtgggctggctcatggctctgtcc
tccatggtcctcatccctggatacatggtctacatgtacttcggactcaagggcacttgg
aaagagcgcctgcggataatgttccagcctcctgcagtggtccgacgaccacaggagaat
ggacctgagacagtggttgccgagaccaacatagcgagtccctctaacgcggccaaccca
actagtccttccaacccggctagtcctgccaacccaactgctgcaagcccggttgctgca
gccccgaccaacccagcacctccagccgttccagctactctggctagccctgtgaaccca
accagtccgatcgttccaactgtccctaccgtccctaccgtccctgccactccagccaac
ccgaccagccctaccagccctaccagcccaccacccaatccggttagcccaacggcaaaa
gagacggccatcccaccacccaacatagtgagctcaacaaacctgaccaacacagaggcc
aatgtctag
DBGET
integrated database retrieval system
