Coregonus clupeaformis (lake whitefish): 121538561
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Entry
121538561 CDS
T08357
Name
(RefSeq) peroxisome proliferator-activated receptor gamma isoform X1
KO
K08530
peroxisome proliferator-activated receptor gamma
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121538561
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121538561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121538561
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121538561
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121538561
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1C. Peroxisome proliferator-activated receptor (PPAR)
121538561
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PPARgamma_N
Tmemb_55A
Motif
Other DBs
NCBI-GeneID:
121538561
NCBI-ProteinID:
XP_041702624
LinkDB
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Position
24:43252853..43260045
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AA seq
516 aa
AA seq
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MSSNPEMVDTQRVAWSMMNFGLGTLDLAEMDNRMNSFDMKTLSTLDYPYLPSLEYSYSSP
HHHSPDRSHSFNHSLDRSHSFNHSPDRSHSDNYTYSEYQCLVKDEPMSPQSSDCSIVGLS
RPPPHSKPPTYTDASSLLNIDCRVCGDKASGFHYGVHACEGCKGFFRRTVRLKLVYDHCN
LHCRIHKKSRNKCQYCRFQKCLLVGMSHDAIRFGRMPQVEREKLQAKLMNVDPRNPESAD
LRALSRQLCLSYHRQFPLTKSKARAILSGKTHGNSLFVIHDMKSLTVGQYFINCRQLPVL
EHQGSVLPPEEPAGELELSFFRRIQFRSAEAVQEVTEFAKSIPGFTELDMNDQVILLKYG
VIEVMTTMLAPLMNKDGTLFAYGQIFMTREFLKSLRMPFCEMMEPKFEFAVKFNVLELDD
SDMALFFAVIILSGDRPGLVNVKPIEDLQDTVLQALELQLKTIHPDCPQLFAKLLQKMTD
LRQLVANQVRLIHLLKKQELEMCLHPLLQEIMRDLY
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctaatccagagatggtggacacacagagagttgcgtggtccatgatgaatttt
gggctgggcacgttggacctggcagagatggacaacaggatgaatagttttgacatgaag
accctatcgacgctggactacccttatctcccctctctcgagtacagctacagcagtccc
catcaccacagcccagacagaagtcactcattcaaccacagcttagacagaagtcactca
ttcaaccacagcccagacagaagccactcagacaactacacctacagcgagtatcaatgt
ttggtaaaagatgagcccatgtcgcctcagtctagcgactgtagcattgtcggcctgtcc
agaccccctcctcactccaagccccctacttacacagacgccagctctctgctcaacatt
gactgtagagtgtgtggggacaaggcttcaggcttccactatggcgtccatgcctgtgag
ggctgcaagggattcttccgcagaactgtgcggttaaaactggtgtatgaccactgtaat
ctgcactgtcggattcacaaaaagagccggaataagtgccagtactgtcgctttcaaaaa
tgtctgctagtgggcatgtcacacgatgctatccgcttcggccggatgccccaggtggag
agagagaagctgcaggctaagttgatgaatgtagaccccaggaacccagagtcagcggac
ctgagagccctgtccagacagctgtgtctgtcctaccacagacaatttcccctgaccaag
agcaaggccagggccatcctctctggaaagacccacggaaactcactgtttgtcatccac
gacatgaagtctctgacggtgggtcagtactttataaactgtagacagctcccagtactg
gagcaccaggggtccgtcctgccccctgaggagcctgctggagagctggagctctccttc
ttccgccgcatccagttccgttccgccgaggccgtacaagaggtcacagagttcgccaag
agcatccctgggttcacagagctggacatgaacgaccaggtgatcctgctgaagtacggg
gtcatcgaggtcatgacgaccatgctggcgccgctcatgaacaaggacggcacactgttt
gcctatggacagatcttcatgacccgggagttcctcaaaagcctgaggatgcccttctgt
gagatgatggagcccaagtttgagtttgcggtaaagtttaacgtgctggagctggacgat
agtgatatggcgcttttcttcgctgtcatcatcctcagtggagaccgtccaggcctggtg
aacgtgaagcccattgaggacctccaggacacagtgctgcaggccctggagctgcagctg
aagaccatccacccagactgcccccagctgtttgccaagctactgcagaagatgaccgac
ctgcggcagctggtggccaaccaagttcgcctcatccacctgctcaagaagcaggagctg
gagatgtgtctgcaccccctactgcaggagatcatgagagacctgtactaa
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