Coregonus clupeaformis (lake whitefish): 121538729
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Entry
121538729 CDS
T08357
Name
(RefSeq) ras GTPase-activating protein-binding protein 1 isoform X1
KO
K17265
Ras GTPase-activating protein-binding protein 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
121538729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121538729
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121538729
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121538729
5.6.2.5 RNA 5'-3' helicase
121538729
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121538729
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121538729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NTF2
RRM_1
RRM_7
NXF_NTF2
Motif
Other DBs
NCBI-GeneID:
121538729
NCBI-ProteinID:
XP_041702826
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All DBs
Position
3:complement(1678744..1689849)
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AA seq
515 aa
AA seq
DB search
MVMEKPSAQLVGREFVRQYYTLLNQAPDYLHRFYGKNSSYVHGGLDNNGKPVESVYGQSE
IHKKVLALNFRDCHTKIRHVDAHATLKEGVVVQVMGELSNDMQPMRKFMQTFVLAPEGTV
ANKFYVHNDVFRYQDEVFGDSDSEPPEESDEEMEERVPSPEVVQEEAAAFYEQTPCTEAK
RPEEEEVVVIPEPEAETEVEPEPDVVDGKQDLEPETQQQQHTTEEQGEKCPVSSPLPSAT
ADPAPAAEDNRPFSWASVTSKNLPPSGAVPVSGVPPHVVKVPSAPGNEHNQQPRVEVKTE
AAAQRTQPRGDQRPREARPGPPPVNRGPRPGGTIHQTASRPTPSTIHQTAGSCSGVREGE
PGESSDVGRVVRYPDAHQLFVGNVPHDVDKAELKEFFQQYGTVLELRINSGGKLPNFGFV
VFDDSEPVQKILSNRPIKFRGDIRLNVEEKKTRSAREGDRRDNRPRGQGGPGGPRERIGG
PRGPPTRGGMAQKPSFGSGRGTGPSEGGRYTGPRQ
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggagaagccaagtgcccagcttgtcgggcgggagtttgtccgacagtactac
acactactcaaccaagcacccgactacctgcacaggttttatgggaaaaattcctcctat
gtacatggaggtctggacaacaatggtaaaccagttgaatcagtctacggacagtcggag
atccataaaaaagtgttggcgctgaacttccgtgactgccacaccaagatcagacatgtg
gacgcccatgcgaccttgaaggagggcgttgtggtgcaagtgatgggggagctgtccaac
gacatgcagcccatgcgcaaattcatgcagacattcgtgctggcccctgagggcactgta
gcaaacaagttctacgttcacaacgatgtattccgttaccaagacgaagtgtttggggat
tctgactcagaaccccctgaagagtctgatgaggagatggaggagagagtaccctcaccg
gaggtggtccaggaagaggctgcagccttctacgaacagacaccctgcaccgaggccaag
aggccagaggaggaggaggtggttgtaatcccagagcctgaggctgaaactgaggtggag
ccggagccagacgtggtggatggaaaacaggacctggagccagagacacagcagcaacaa
cacaccacagaggagcagggagagaagtgtccggtctcctcacccctgccctccgccact
gctgaccctgcacctgccgctgaagataaccggcctttctcctgggcgtctgtcaccagt
aagaacctcccccctagtggagctgtgcctgtctcgggcgtcccccctcacgtagtcaaa
gtcccgtcggcaccgggcaacgaacacaatcaacagcccagggtggaggtgaaaacagaa
gctgcagcacagagaacacaaccgagaggagaccagagaccacgggaagcaaggccaggc
cccccaccagtcaacagaggacccagaccaggaggtacgatccaccagacagcatctcgc
ccaacacccagtaccatccaccagacagctgggtcatgttcaggagtgagggaaggagaa
ccgggagagtcgtcggacgttggccgcgttgtgaggtatccagacgctcaccagctcttt
gtaggaaacgtcccccatgatgtggacaaggcagagctcaaggagtttttccaacagtat
ggtactgtgcttgagctacggatcaacagcggaggaaagcttcccaactttggattcgtg
gtgtttgacgattcggaacctgtacagaaaatcctaagcaaccggcccattaagttccga
ggagacatccgactgaacgtggaggaaaagaagactcgctccgcccgggaaggggaccgg
cgtgacaaccgccccaggggtcaaggtggccctggagggccccgagagaggataggaggg
cccagaggcccccccaccaggggtggcatggcacagaaacccagctttggctctggacga
ggcactggacccagcgagggaggtcgctacacgggacctcgtcagtga
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