Coregonus clupeaformis (lake whitefish): 121539083
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Entry
121539083 CDS
T08357
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04520
Adherens junction
cclu04530
Tight junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121539083
04520 Adherens junction
121539083
04530 Tight junction
121539083
09142 Cell motility
04810 Regulation of actin cytoskeleton
121539083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121539083
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121539083
04147 Exosome [BR:
cclu04147
]
121539083
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121539083
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121539083
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121539083
Exosomal proteins of colorectal cancer cells
121539083
Exosomal proteins of bladder cancer cells
121539083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
XisI
Uds1
Motif
Other DBs
NCBI-GeneID:
121539083
NCBI-ProteinID:
XP_041703253
LinkDB
All DBs
Position
25:complement(18212873..18360677)
Genome browser
AA seq
896 aa
AA seq
DB search
MPTFDMDPYDGDENDYMPQEDDWDRDMLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIE
EDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALHYITSKGVKLVSIGAEEIV
DGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDG
LGFCALIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEK
AIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPW
LENRAPENTMQAMQQKLEDFRDYRRQHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPS
EGKMVSDVSNAWGGLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTEGKEEM
LQARDFETASLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARC
QRICDQWDALGALTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTF
IVHTIEEIQGLSTAHEQFKATLPEADKERGAILGIHNEIAKIVATYHVNMAGTNPYTTIN
PQEINAKWDKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKMEEIGRI
SIEMHGTLEDQLTHLRQYEKNIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVG
WEQLLTTIARTINEIENQILTRDAKGISQDQMNEFRASFNHFDRDHSGTLGAEEFKACLI
SLGFDIANDAQGEAEFSRIMSIVDPNRVGVVTFQSFIDFMSRETADTDTADQVIASFKVL
AGDKNFIMADELRRELPPDQADYCIARMAPYSGTDAVPGALDYMSFSTALYGESDL
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgcctactttcgacatggacccgtatgacggagatgaaaacgattatatgcctcaggaa
gatgactgggaccgggatatgctgttggacccggcgtgggagaaacagcagagaaagacg
ttcacggcctggtgtaactcccacctaaggaaagccggaacgcagatcgagaacatcgag
gaggacttcagggacggactgaaactcatgctgctgctggaggtcatatcaggcgaacgc
ttggccaaaccagagagagggaagatgagagtccacaagatctccaacgtcaacaaagct
ctccactacatcaccagtaaaggagtcaagctggtgtccatcggagctgaggagatcgtt
gacggcaacgctaaaatgaccctgggaatgatctggaccataatccttcgcttcgccatc
caggacatctctgtggaagaaacatcagctaaagagggtcttcttctgtggtgccagagg
aagactgctccttacaagaacgtcaacattcagaactttcacattagctggaaagatggg
ttgggattctgtgctctcattcacagacaccgtccagagctcattgactatggcaagcta
cgcaaggatgaccccatgaccaacctgaacacggccttcgacgtggcagagaagtacctg
gacatccccaagatgttggacgctgaggacatcgtgggcacggcccgcccggatgagaag
gccatcatgacctacgtatctagcttctaccacgccttctctggtgctcaaaaggcggag
acagcggccaataggatctgcaaggtgttggctgtgaaccaagagaatgagcagctgatg
gaggactacgagaagctggctagtgatctcttggagtggatccgtcgcaccatcccctgg
ctggagaaccgtgccccagagaacaccatgcaggctatgcagcagaagctggaagacttc
agggactatcgccgccaacacaaaccccccaaggtccaggagaagtgccagctggagatt
aacttcaacaccctgcagaccaagctgaggctgagcaacaggcctgccttcatgccttct
gaggggaagatggtgtcagacgtctctaacgcgtggggcggtctggagggggcggagaag
ggttatgaggagtggctcctcaacgagatacgtcggctggagagactcgaccacctggcc
gagaagtttcggcagaaagcagccatccacgaagcctggactgaaggtaaggaggagatg
ctgcaggcgcgggactttgagacggcctctctgtctgagatcaaggctctgctgaagaaa
catgaggccttcgagagcgacctggctgcgcaccaggaccgcgtagagcagatagctgcc
atcgcacaggagctaaatgagctagactactatgactcccccagtgtgaatgctcgatgc
cagaggatatgcgaccaatgggatgccctaggagccctgacccagaaacgaagcgaggcc
ctgcagagaactgagaagcttctggagaccatagaccagttatatctcgagtttgccaaa
cgagctgctccgttcaacaactggatggagggcgccatggaggacctgcaggacaccttc
atcgtccacaccatagaggaaatacagggtctcagtacagcccatgagcagtttaaggcc
actctccctgaggcggataaggaacgcggtgccatcctgggcattcacaatgagatcgcc
aagatagtggccacctaccatgtgaacatggccggcaccaacccctacaccaccatcaac
cctcaggagatcaacgccaagtgggacaaggtgagacagctggtgccacagagggaccag
gctctgatcgaagagcacgcccggcagcagaacaacgagcgtctccgcaggcagttcgcc
aaccaggccaacgtcatcgggccctggatccagaccaagatggaggagattggtcgtatc
tccatcgagatgcacggaaccctggaggatcagctgacccacctccgccaatacgagaag
aacattgtcaactacaagccaaagatcgaccaattggagggagaccaccagctgattcag
gaagctctcatcttcgacaacaagcacaccaactacaccatggagcatatccgtgtgggc
tgggagcagctcctgaccaccatcgccagaaccatcaatgagatcgagaaccagattctg
acgagggacgccaagggcatcagccaggaccagatgaacgagttcagagcctccttcaac
cacttcgacagggaccactcgggcactctgggggctgaggagttcaaggcctgcctgatc
agtctgggcttcgatatcgccaacgatgcacagggtgaagcggaattctctcgcatcatg
agcatcgtcgatcccaaccgggtgggcgtggtcacgttccagtcctttattgacttcatg
tcccgggagacggccgatactgacaccgctgaccaggtcattgcctccttcaaggtcctg
gctggggacaagaacttcatcatggccgatgagcttcgtcgtgagttgcctcctgatcag
gcagattactgcatcgcacgcatggcgccctactccggcaccgacgccgtacccggcgcc
ctggactacatgtccttctccaccgcactctacggagagagtgacctctga
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